1. Home
  2. Species
  3. Salvinia cucullata
  4. Sequence
  5. Sacu_v1.1_s0013.g005863

Sacu_v1.1_s0013.g005863


Description : substrate adaptor *(AUF) of SCF E3 ubiquitin ligase complex & original description: CDS=140-1243


Gene families : OG0000644 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000644_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0013.g005863

Target Alias Description ECC score Gene Family Method Actions
Ceric.39G005700.1 Ceric.39G005700 substrate adaptor *(AUF) of SCF E3 ubiquitin ligase... 0.01 OrthoFinder output from all 47 species
Mp4g07250.1 No alias component FBX of SCF E3 ubiquitin ligase complex 0.03 OrthoFinder output from all 47 species
Solyc02g070480.4.1 Solyc02g070480 component FBX of SCF E3 ubiquitin ligase complex 0.02 OrthoFinder output from all 47 species
Solyc08g048430.4.1 Solyc08g048430 component FBX of SCF E3 ubiquitin ligase complex 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000159 protein phosphatase type 2A complex IEP HCCA
BP GO:0002097 tRNA wobble base modification IEP HCCA
BP GO:0002098 tRNA wobble uridine modification IEP HCCA
MF GO:0005049 nuclear export signal receptor activity IEP HCCA
MF GO:0005507 copper ion binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005758 mitochondrial intermembrane space IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
CC GO:0008287 protein serine/threonine phosphatase complex IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0016530 metallochaperone activity IEP HCCA
MF GO:0016531 copper chaperone activity IEP HCCA
MF GO:0019208 phosphatase regulator activity IEP HCCA
MF GO:0019888 protein phosphatase regulator activity IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
MF GO:0031267 small GTPase binding IEP HCCA
CC GO:0031970 organelle envelope lumen IEP HCCA
CC GO:0031974 membrane-enclosed lumen IEP HCCA
CC GO:0033588 elongator holoenzyme complex IEP HCCA
CC GO:0043233 organelle lumen IEP HCCA
MF GO:0051020 GTPase binding IEP HCCA
CC GO:0070013 intracellular organelle lumen IEP HCCA
MF GO:0140104 molecular carrier activity IEP HCCA
MF GO:0140142 nucleocytoplasmic carrier activity IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1903293 phosphatase complex IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 265 309
IPR002885 Pentatricopeptide_repeat 162 209
IPR002885 Pentatricopeptide_repeat 566 613
IPR002885 Pentatricopeptide_repeat 363 411
IPR002885 Pentatricopeptide_repeat 464 509
IPR002885 Pentatricopeptide_repeat 640 664
IPR002885 Pentatricopeptide_repeat 105 131
IPR002885 Pentatricopeptide_repeat 540 565
No external refs found!