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  5. Sacu_v1.1_s0013.g005820

Sacu_v1.1_s0013.g005820


Description : not classified & original description: CDS=772-1503


Gene families : OG0001788 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001788_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0013.g005820
Cluster HCCA: Cluster_50

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00048p00209000 BRXL1, ATBRXL1,... Protein BREVIS RADIX OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Aob_g23985 BRX, NLM9 plasma membrane-to-nucleus signalling factor *(BRX) &... 0.03 OrthoFinder output from all 47 species
Aop_g05174 BRX-LIKE2, ATBRXL2 plasma membrane-to-nucleus signalling factor *(BRX) &... 0.03 OrthoFinder output from all 47 species
Dde_g23004 BRX-LIKE2, ATBRXL2 plasma membrane-to-nucleus signalling factor *(BRX) &... 0.03 OrthoFinder output from all 47 species
GSVIVT01016782001 BRX-LIKE2, ATBRXL2 Protein Brevis radix-like 2 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
LOC_Os03g63650.1 BRXL1, ATBRXL1,... Protein Brevis radix-like 4 OS=Oryza sativa subsp.... 0.02 OrthoFinder output from all 47 species
LOC_Os04g39940.1 BRX-LIKE2,... Putative protein Brevis radix-like 5 OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
LOC_Os09g27230.1 ATBRXL4, BRXL4,... Protein Brevis radix-like 1 OS=Oryza sativa subsp.... 0.02 OrthoFinder output from all 47 species
Len_g07149 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g36943 ATBRXL4, BRXL4, BRX-LIKE4 plasma membrane-to-nucleus signalling factor *(BRX) &... 0.03 OrthoFinder output from all 47 species
MA_129791g0010 BRXL1, ATBRXL1 Protein Brevis radix-like 3 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Pir_g14196 BRX-LIKE2, ATBRXL2 plasma membrane-to-nucleus signalling factor *(BRX) &... 0.04 OrthoFinder output from all 47 species
Zm00001e007054_P001 BRX, NLM9, Zm00001e007054 Protein Brevis radix-like 2 OS=Oryza sativa subsp.... 0.02 OrthoFinder output from all 47 species
Zm00001e015552_P003 BRX, NLM9, Zm00001e015552 Protein Brevis radix-like 2 OS=Oryza sativa subsp.... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
CC GO:0008250 oligosaccharyltransferase complex IEP HCCA
CC GO:0016459 myosin complex IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
CC GO:0140534 endoplasmic reticulum protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR013591 Brevis_radix_dom 56 107
IPR013591 Brevis_radix_dom 206 234
No external refs found!