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  5. Sacu_v1.1_s0013.g005803

Sacu_v1.1_s0013.g005803


Description : not classified & original description: CDS=32-2446


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0013.g005803
Cluster HCCA: Cluster_36

Target Alias Description ECC score Gene Family Method Actions
AT3G49170 EMB2261 Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT3G62890 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g007782 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g015952 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g07452 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g10633 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g17191 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ala_g24397 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g29063 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g05734 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g06971 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g13985 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g39230 OTP84 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene29787.t1 Aspi01Gene29787 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene33231.t1 CRR22, Aspi01Gene33231 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene34713.t1 Aspi01Gene34713 ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene34740.t1 Aspi01Gene34740 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene60910.t1 Aspi01Gene60910 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene65851.t1 Aspi01Gene65851 ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene70773.t1 OTP84, Aspi01Gene70773 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0117.g046569 No alias not classified & original description: CDS=1-2520 0.01 OrthoFinder output from all 47 species
Cba_g43653 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.01G121800.1 Ceric.01G121800 not classified & original description: pacid=50593016... 0.01 OrthoFinder output from all 47 species
Ceric.04G015100.1 Ceric.04G015100 not classified & original description: pacid=50632156... 0.03 OrthoFinder output from all 47 species
Ceric.04G048900.1 Ceric.04G048900 ssDNA-binding protein *(OSB) & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.04G079600.1 OTP84, Ceric.04G079600 not classified & original description: pacid=50631214... 0.04 OrthoFinder output from all 47 species
Ceric.09G007000.1 Ceric.09G007000 not classified & original description: pacid=50586983... 0.01 OrthoFinder output from all 47 species
Ceric.26G011100.1 Ceric.26G011100 not classified & original description: pacid=50599840... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000383.101 No alias No description available 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021035.24 No alias Pentatricopeptide repeat-containing protein At1g63080,... 0.01 OrthoFinder output from all 47 species
Dac_g03990 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g18280 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g33092 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g35075 REME1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g06364 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g07695 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g43258 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dde_g04899 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g06719 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dde_g23588 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g28699 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g04950 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g06075 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g13146 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g17807 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g19160 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g20638 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g24725 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g25136 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01029254001 OSB4 RNA biosynthesis.organelle machineries.RNA polymerase... 0.01 OrthoFinder output from all 47 species
GSVIVT01037258001 No alias Pentatricopeptide repeat-containing protein At5g27110... 0.02 OrthoFinder output from all 47 species
LOC_Os04g14130.1 LOC_Os04g14130 Pentatricopeptide repeat-containing protein At5g16860... 0.03 OrthoFinder output from all 47 species
LOC_Os06g29800.1 LOC_Os06g29800 Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
LOC_Os06g47920.1 LOC_Os06g47920 Pentatricopeptide repeat-containing protein At5g44230... 0.02 OrthoFinder output from all 47 species
Len_g03276 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g03400 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g03808 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g03909 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Len_g08358 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g21510 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07126 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_10432704g0020 CRR22 Pentatricopeptide repeat-containing protein DOT4,... 0.01 OrthoFinder output from all 47 species
Msp_g03763 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Msp_g04472 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g09454 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g26428 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g26486 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g41395 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Msp_g46446 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Nbi_g05901 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g08329 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g25474 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Nbi_g29244 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g17591 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g22460 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g27030 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g33905 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Pir_g11351 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g56915 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g25238 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g05095 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g06977 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g12807 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g13330 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g40150 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g53548 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0116.g021049 VAC1, ECB2, ATECB2 not classified & original description: CDS=1-2289 0.03 OrthoFinder output from all 47 species
Sam_g11900 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g16549 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g35204 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g36592 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g40196 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g51263 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo81625 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.02 OrthoFinder output from all 47 species
Solyc02g094480.4.1 Solyc02g094480 RNA editing factor (MEF14) 0.02 OrthoFinder output from all 47 species
Spa_g14545 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g04725 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g06875 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g08446 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Tin_g09422 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g13336 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g26545 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g38826 REME1 not classified & original description: none 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003684 damaged DNA binding IEP HCCA
MF GO:0004674 protein serine/threonine kinase activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
BP GO:0016226 iron-sulfur cluster assembly IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
BP GO:0031163 metallo-sulfur cluster assembly IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 200 238
IPR046848 E_motif 567 619
IPR002885 Pentatricopeptide_repeat 74 101
IPR002885 Pentatricopeptide_repeat 104 134
IPR002885 Pentatricopeptide_repeat 445 493
IPR002885 Pentatricopeptide_repeat 242 286
IPR002885 Pentatricopeptide_repeat 344 390
No external refs found!