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  5. Sacu_v1.1_s0013.g005782

Sacu_v1.1_s0013.g005782


Description : not classified & original description: CDS=1-2136


Gene families : OG0000627 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000627_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0013.g005782
Cluster HCCA: Cluster_43

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00119p00021560 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C3H zinc... 0.04 OrthoFinder output from all 47 species
AT3G51950 No alias Zinc finger (CCCH-type) family protein / RNA recognition... 0.04 OrthoFinder output from all 47 species
AT3G63450 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 OrthoFinder output from all 47 species
Adi_g083991 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g106866 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g109492 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g125875 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g11932 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g42057 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0076.g037780 No alias not classified & original description: CDS=1-1272 0.03 OrthoFinder output from all 47 species
Dcu_g39714 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g07818 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os03g21140.1 LOC_Os03g21140 C3H zinc finger transcription factor 0.06 OrthoFinder output from all 47 species
LOC_Os03g21160.2 LOC_Os03g21160 C3H zinc finger transcription factor 0.05 OrthoFinder output from all 47 species
Mp5g21520.1 No alias C3H zinc finger transcription factor 0.02 OrthoFinder output from all 47 species
Ore_g31565 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g29539 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g15664 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g16096 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g09058 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Smo437396 No alias RNA biosynthesis.transcriptional activation.C3H zinc... 0.02 OrthoFinder output from all 47 species
Zm00001e024022_P001 Zm00001e024022 C3H zinc finger transcription factor 0.05 OrthoFinder output from all 47 species
Zm00001e039250_P004 Zm00001e039250 C3H zinc finger transcription factor 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006633 fatty acid biosynthetic process IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0016790 thiolester hydrolase activity IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
MF GO:0050664 oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor IEP HCCA
BP GO:0072330 monocarboxylic acid biosynthetic process IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
InterPro domains Description Start Stop
IPR025605 OST-HTH/LOTUS_dom 275 346
IPR000571 Znf_CCCH 226 248
IPR000504 RRM_dom 417 468
No external refs found!