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  5. Sacu_v1.1_s0013.g005713

Sacu_v1.1_s0013.g005713


Description : component *(MED26) of MEDIATOR transcription co-activator complex & original description: CDS=131-1306


Gene families : OG0000390 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000390_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0013.g005713
Cluster HCCA: Cluster_37

Target Alias Description ECC score Gene Family Method Actions
Adi_g085832 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0003.g007468 No alias not classified & original description: CDS=188-1642 0.03 OrthoFinder output from all 47 species
Ceric.32G000300.1 Ceric.32G000300 not classified & original description: pacid=50598005... 0.03 OrthoFinder output from all 47 species
LOC_Os05g34210.1 LOC_Os05g34210 component MED26 of MEDIATOR transcription co-activator complex 0.04 OrthoFinder output from all 47 species
Ore_g06434 No alias component *(MED26) of MEDIATOR transcription... 0.02 OrthoFinder output from all 47 species
Pnu_g22829 No alias component *(MED26) of MEDIATOR transcription... 0.02 OrthoFinder output from all 47 species
Pnu_g29832 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Solyc10g080930.2.1 Solyc10g080930 component MED26 of MEDIATOR transcription co-activator complex 0.03 OrthoFinder output from all 47 species
Solyc11g005450.3.1 Solyc11g005450 Probable mediator of RNA polymerase II transcription... 0.03 OrthoFinder output from all 47 species
Zm00001e027059_P003 Zm00001e027059 component MED26 of MEDIATOR transcription co-activator complex 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004197 cysteine-type endopeptidase activity IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0016151 nickel cation binding IEP HCCA
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP HCCA
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP HCCA
MF GO:0030246 carbohydrate binding IEP HCCA
BP GO:0050790 regulation of catalytic activity IEP HCCA
MF GO:0051213 dioxygenase activity IEP HCCA
BP GO:0065009 regulation of molecular function IEP HCCA
InterPro domains Description Start Stop
IPR017923 TFIIS_N 133 181
No external refs found!