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  5. Sacu_v1.1_s0012.g005674

Sacu_v1.1_s0012.g005674


Description : GRAS-type transcription factor & original description: CDS=1-2607


Gene families : OG0002830 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002830_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0012.g005674
Cluster HCCA: Cluster_46

Target Alias Description ECC score Gene Family Method Actions
Aob_g18054 ATHAM3, HAM3, LOM3 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene06360.t1 ATHAM3, HAM3,... GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.08G011800.1 HAM2, LOM2,... GRAS-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
LOC_Os02g44370.1 ATHAM3, HAM3,... transcription factor (GRAS) 0.02 OrthoFinder output from all 47 species
LOC_Os06g01620.1 ATHAM3, HAM3,... transcription factor (GRAS) 0.03 OrthoFinder output from all 47 species
LOC_Os10g40390.1 ATHAM3, HAM3,... transcription factor (GRAS) 0.02 OrthoFinder output from all 47 species
Solyc01g090950.4.1 ATHAM3, HAM3,... transcription factor (GRAS) 0.03 OrthoFinder output from all 47 species
Zm00001e002296_P001 ATHAM3, HAM3,... transcription factor (GRAS) 0.04 OrthoFinder output from all 47 species
Zm00001e036709_P001 ATHAM3, HAM3,... transcription factor (GRAS) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
BP GO:0008037 cell recognition IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0048544 recognition of pollen IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR005202 TF_GRAS 486 867
No external refs found!