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  5. Sacu_v1.1_s0012.g005461

Sacu_v1.1_s0012.g005461


Description : not classified & original description: CDS=1-2256


Gene families : OG0016926 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0016926_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0012.g005461

Target Alias Description ECC score Gene Family Method Actions
Aop_g15697 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.24G025900.1 Ceric.24G025900 not classified & original description: pacid=50629515... 0.03 OrthoFinder output from all 47 species
Len_g18063 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0004045 aminoacyl-tRNA hydrolase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
MF GO:0008483 transaminase activity IEP HCCA
BP GO:0010215 cellulose microfibril organization IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
BP GO:0030198 extracellular matrix organization IEP HCCA
BP GO:0043062 extracellular structure organization IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 594 641
IPR002885 Pentatricopeptide_repeat 493 541
IPR002885 Pentatricopeptide_repeat 291 337
IPR002885 Pentatricopeptide_repeat 391 439
IPR002885 Pentatricopeptide_repeat 468 487
IPR002885 Pentatricopeptide_repeat 265 285
IPR002885 Pentatricopeptide_repeat 93 118
IPR002885 Pentatricopeptide_repeat 192 221
IPR002885 Pentatricopeptide_repeat 569 591
IPR002885 Pentatricopeptide_repeat 164 187
No external refs found!