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  5. Sacu_v1.1_s0011.g005285

Sacu_v1.1_s0011.g005285


Description : not classified & original description: CDS=297-1337


Gene families : OG0000390 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000390_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0011.g005285
Cluster HCCA: Cluster_36

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00101p00137160 evm_27.TU.AmTr_v1... RNA biosynthesis.RNA polymerase II-dependent... 0.02 OrthoFinder output from all 47 species
Adi_g012316 No alias component *(MED26) of MEDIATOR transcription... 0.02 OrthoFinder output from all 47 species
Dac_g22233 No alias component *(MED26) of MEDIATOR transcription... 0.03 OrthoFinder output from all 47 species
Sam_g38003 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo404483 No alias Probable mediator of RNA polymerase II transcription... 0.03 OrthoFinder output from all 47 species
Solyc11g005450.3.1 Solyc11g005450 Probable mediator of RNA polymerase II transcription... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEP HCCA
MF GO:0015095 magnesium ion transmembrane transporter activity IEP HCCA
BP GO:0015693 magnesium ion transport IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
InterPro domains Description Start Stop
IPR017923 TFIIS_N 219 269
No external refs found!