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  5. Sacu_v1.1_s0011.g005256

Sacu_v1.1_s0011.g005256 (BPM4, ATBPM4)


Aliases : BPM4, ATBPM4

Description : not classified & original description: CDS=44-1702


Gene families : OG0000564 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000564_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0011.g005256

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01029981001 BPM4, ATBPM4 BTB/POZ and MATH domain-containing protein 4... 0.02 OrthoFinder output from all 47 species
Gb_18050 ATBPM2, BPM2 BTB/POZ and MATH domain-containing protein 1... 0.02 OrthoFinder output from all 47 species
LOC_Os07g01140.1 ATBPM3, BPM3,... BTB/POZ and MATH domain-containing protein 3... 0.02 OrthoFinder output from all 47 species
MA_918722g0010 BPM4, ATBPM4 BTB/POZ and MATH domain-containing protein 4... 0.02 OrthoFinder output from all 47 species
Mp7g17300.1 ATBPM2, BPM2 BTB/POZ and MATH domain-containing protein 2... 0.02 OrthoFinder output from all 47 species
Nbi_g02959 ATBPM2, BPM2 substrate adaptor *(BPM) of CUL3-BTB E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
Nbi_g31771 ATBPM2, BPM2 substrate adaptor *(BPM) of CUL3-BTB E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species
Pnu_g23081 BPM4, ATBPM4 substrate adaptor *(BPM) of CUL3-BTB E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species
Solyc09g072980.2.1 ATBPM2, BPM2,... BTB/POZ and MATH domain-containing protein 2... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0002097 tRNA wobble base modification IEP HCCA
BP GO:0002098 tRNA wobble uridine modification IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
CC GO:0033588 elongator holoenzyme complex IEP HCCA
MF GO:0042393 histone binding IEP HCCA
InterPro domains Description Start Stop
IPR000210 BTB/POZ_dom 335 451
No external refs found!