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  5. Sacu_v1.1_s0010.g004917

Sacu_v1.1_s0010.g004917


Description : mRNA decay factor *(PAT1) & original description: CDS=1-2328


Gene families : OG0002686 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002686_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0010.g004917
Cluster HCCA: Cluster_33

Target Alias Description ECC score Gene Family Method Actions
Als_g64112 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g02035 No alias mRNA decay factor *(PAT1) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.32G051000.1 Ceric.32G051000 mRNA decay factor *(PAT1) & original description:... 0.04 OrthoFinder output from all 47 species
Dcu_g04904 No alias mRNA decay factor *(PAT1) & original description: none 0.03 OrthoFinder output from all 47 species
Gb_01548 No alias mRNA decay factor (PAT1) 0.03 OrthoFinder output from all 47 species
LOC_Os02g19220.1 LOC_Os02g19220 mRNA decay factor (PAT1) 0.04 OrthoFinder output from all 47 species
Mp4g14040.1 No alias mRNA decay factor (PAT1) 0.02 OrthoFinder output from all 47 species
Pir_g49700 No alias mRNA decay factor *(PAT1) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc05g016240.4.1 Solyc05g016240 mRNA decay factor (PAT1) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005516 calmodulin binding IEP HCCA
BP GO:0006479 protein methylation IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
BP GO:0008213 protein alkylation IEP HCCA
MF GO:0008276 protein methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
MF GO:0016278 lysine N-methyltransferase activity IEP HCCA
MF GO:0016279 protein-lysine N-methyltransferase activity IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016571 histone methylation IEP HCCA
BP GO:0018022 peptidyl-lysine methylation IEP HCCA
MF GO:0018024 histone lysine N-methyltransferase activity IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0034968 histone lysine methylation IEP HCCA
MF GO:0042054 histone methyltransferase activity IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA

No InterPro domains available for this sequence

No external refs found!