1. Home
  2. Species
  3. Salvinia cucullata
  4. Sequence
  5. Sacu_v1.1_s0010.g004831

Sacu_v1.1_s0010.g004831


Description : HYL1-interacting scaffold factor (CARP9) of miRNA biogenesis pathway & original description: CDS=1-3609


Gene families : OG0002982 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002982_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0010.g004831

Target Alias Description ECC score Gene Family Method Actions
AT3G21290 No alias dentin sialophosphoprotein-related 0.03 OrthoFinder output from all 47 species
Adi_g117176 No alias HYL1-interacting scaffold factor (CARP9) of miRNA... 0.02 OrthoFinder output from all 47 species
Aev_g14965 No alias HYL1-interacting scaffold factor (CARP9) of miRNA... 0.03 OrthoFinder output from all 47 species
Ceric.05G022400.1 Ceric.05G022400 HYL1-interacting scaffold factor (CARP9) of miRNA... 0.06 OrthoFinder output from all 47 species
Dac_g09425 No alias HYL1-interacting scaffold factor (CARP9) of miRNA... 0.03 OrthoFinder output from all 47 species
Dcu_g02053 No alias HYL1-interacting scaffold factor (CARP9) of miRNA... 0.04 OrthoFinder output from all 47 species
Dde_g11222 No alias HYL1-interacting scaffold factor (CARP9) of miRNA... 0.02 OrthoFinder output from all 47 species
GSVIVT01016889001 No alias No description available 0.04 OrthoFinder output from all 47 species
Len_g24720 No alias HYL1-interacting scaffold factor (CARP9) of miRNA... 0.03 OrthoFinder output from all 47 species
MA_113519g0010 CTF18 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Mp2g06020.1 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Msp_g27246 No alias HYL1-interacting scaffold factor (CARP9) of miRNA... 0.03 OrthoFinder output from all 47 species
Ore_g16143 No alias HYL1-interacting scaffold factor (CARP9) of miRNA... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0128.g021907 No alias HYL1-interacting scaffold factor (CARP9) of miRNA... 0.04 OrthoFinder output from all 47 species
Sam_g17297 No alias HYL1-interacting scaffold factor (CARP9) of miRNA... 0.05 OrthoFinder output from all 47 species
Sam_g51477 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc03g121380.3.1 Solyc03g121380 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Spa_g12857 No alias HYL1-interacting scaffold factor (CARP9) of miRNA... 0.04 OrthoFinder output from all 47 species
Zm00001e000644_P002 Zm00001e000644 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e038842_P001 Zm00001e038842 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0004197 cysteine-type endopeptidase activity IEP HCCA
MF GO:0004198 calcium-dependent cysteine-type endopeptidase activity IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140299 small molecule sensor activity IEP HCCA
MF GO:0140612 DNA damage sensor activity IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:0140664 ATP-dependent DNA damage sensor activity IEP HCCA
InterPro domains Description Start Stop
IPR010844 Occludin_ELL 1070 1164
No external refs found!