1. Home
  2. Species
  3. Salvinia cucullata
  4. Sequence
  5. Sacu_v1.1_s0010.g004818

Sacu_v1.1_s0010.g004818


Description : regulatory protein *(RGG) of mRNA quality control & original description: CDS=144-1307


Gene families : OG0000880 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000880_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0010.g004818

Target Alias Description ECC score Gene Family Method Actions
AT4G17520 No alias Hyaluronan / mRNA binding family 0.03 OrthoFinder output from all 47 species
Aop_g30074 No alias regulatory protein *(RGG) of mRNA quality control &... 0.06 OrthoFinder output from all 47 species
Azfi_s0208.g057973 No alias regulatory protein *(RGG) of mRNA quality control &... 0.05 OrthoFinder output from all 47 species
Gb_32212 No alias RGG repeats nuclear RNA binding protein A OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
LOC_Os05g51180.1 LOC_Os05g51180 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Len_g13836 No alias regulatory protein *(RGG) of mRNA quality control &... 0.03 OrthoFinder output from all 47 species
Lfl_g25358 No alias regulatory protein *(RGG) of mRNA quality control &... 0.02 OrthoFinder output from all 47 species
Mp4g04410.1 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Nbi_g09170 No alias regulatory protein *(RGG) of mRNA quality control &... 0.03 OrthoFinder output from all 47 species
Ppi_g02057 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g31252 No alias regulatory protein *(RGG) of mRNA quality control &... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0004312 fatty acid synthase activity IEP HCCA
MF GO:0004315 3-oxoacyl-[acyl-carrier-protein] synthase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006633 fatty acid biosynthetic process IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008199 ferric iron binding IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016226 iron-sulfur cluster assembly IEP HCCA
CC GO:0016272 prefoldin complex IEP HCCA
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP HCCA
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0031163 metallo-sulfur cluster assembly IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0072330 monocarboxylic acid biosynthetic process IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR019084 Stm1-like_N 2 74
IPR006861 HABP4_PAIRBP1-bd 173 278
No external refs found!