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  5. Sacu_v1.1_s0009.g004478

Sacu_v1.1_s0009.g004478


Description : E3 ubiquitin ligase & original description: CDS=1-831


Gene families : OG0006828 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006828_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0009.g004478
Cluster HCCA: Cluster_37

Target Alias Description ECC score Gene Family Method Actions
AT1G69330 No alias RING/U-box superfamily protein 0.04 OrthoFinder output from all 47 species
Len_g04133 No alias E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g26856 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g31069 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0004408 holocytochrome-c synthase activity IEP HCCA
CC GO:0005739 mitochondrion IEP HCCA
MF GO:0016846 carbon-sulfur lyase activity IEP HCCA

No InterPro domains available for this sequence

No external refs found!