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  5. Sacu_v1.1_s0008.g003963

Sacu_v1.1_s0008.g003963


Description : not classified & original description: CDS=1-4017


Gene families : OG0000043 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0008.g003963
Cluster HCCA: Cluster_18

Target Alias Description ECC score Gene Family Method Actions
Adi_g018518 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.01G085500.1 CRR22, Ceric.01G085500 not classified & original description: pacid=50592662... 0.03 OrthoFinder output from all 47 species
Dde_g19719 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g45899 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g13804 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g15540 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g15092 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000390 No alias not classified & original description: CDS=1-1221 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 1087 1130
IPR002885 Pentatricopeptide_repeat 387 434
IPR002885 Pentatricopeptide_repeat 269 316
IPR002885 Pentatricopeptide_repeat 736 782
IPR002885 Pentatricopeptide_repeat 853 899
IPR002885 Pentatricopeptide_repeat 1184 1231
IPR002885 Pentatricopeptide_repeat 966 1014
IPR002885 Pentatricopeptide_repeat 172 196
IPR002885 Pentatricopeptide_repeat 941 963
IPR002885 Pentatricopeptide_repeat 827 847
IPR002885 Pentatricopeptide_repeat 505 532
No external refs found!