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  5. Sacu_v1.1_s0008.g003960

Sacu_v1.1_s0008.g003960


Description : not classified & original description: CDS=90-1319


Gene families : OG0000572 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000572_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0008.g003960
Cluster HCCA: Cluster_2

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00011p00254250 evm_27.TU.AmTr_v1... No description available 0.08 OrthoFinder output from all 47 species
Aob_g27528 No alias not classified & original description: none 0.12 OrthoFinder output from all 47 species
Cba_g09236 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ceric.15G069700.1 Ceric.15G069700 not classified & original description: pacid=50640847... 0.05 OrthoFinder output from all 47 species
Dde_g10114 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g10929 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ppi_g16910 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
InterPro domains Description Start Stop
IPR000073 AB_hydrolase_1 162 396
IPR002885 Pentatricopeptide_repeat 1087 1130
IPR002885 Pentatricopeptide_repeat 387 434
IPR002885 Pentatricopeptide_repeat 269 316
IPR002885 Pentatricopeptide_repeat 736 782
IPR002885 Pentatricopeptide_repeat 853 899
IPR002885 Pentatricopeptide_repeat 1184 1231
IPR002885 Pentatricopeptide_repeat 966 1014
IPR002885 Pentatricopeptide_repeat 172 196
IPR002885 Pentatricopeptide_repeat 941 963
IPR002885 Pentatricopeptide_repeat 827 847
IPR002885 Pentatricopeptide_repeat 505 532
No external refs found!