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  5. Sacu_v1.1_s0007.g003692

Sacu_v1.1_s0007.g003692


Description : PHD finger transcription factor & original description: CDS=208-5475


Gene families : OG0003668 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003668_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0007.g003692
Cluster HCCA: Cluster_33

Target Alias Description ECC score Gene Family Method Actions
AT5G12400 No alias DNA binding;zinc ion binding;DNA binding 0.05 OrthoFinder output from all 47 species
AT5G22760 No alias PHD finger family protein 0.03 OrthoFinder output from all 47 species
AT5G35210 No alias metalloendopeptidases;zinc ion binding;DNA binding 0.07 OrthoFinder output from all 47 species
Adi_g107345 No alias PHD finger transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g10447 No alias PHD finger transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene10763.t1 Aspi01Gene10763 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g75389 No alias PHD finger transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g14658 No alias PHD finger transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g08699 No alias PHD finger transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01037231001 No alias RNA biosynthesis.transcriptional activation.PHD finger... 0.08 OrthoFinder output from all 47 species
LOC_Os11g05130.1 LOC_Os11g05130 PHD finger transcription factor 0.05 OrthoFinder output from all 47 species
Mp4g03480.1 No alias PHD finger transcription factor 0.06 OrthoFinder output from all 47 species
Msp_g48762 No alias PHD finger transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g25995 No alias PHD finger transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Solyc11g065160.3.1 Solyc11g065160 PHD finger transcription factor 0.05 OrthoFinder output from all 47 species
Solyc11g066780.3.1 Solyc11g066780 PHD finger transcription factor 0.03 OrthoFinder output from all 47 species
Zm00001e035778_P001 Zm00001e035778 PHD finger transcription factor 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0008037 cell recognition IEP HCCA
CC GO:0016459 myosin complex IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
BP GO:0048544 recognition of pollen IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
InterPro domains Description Start Stop
IPR018501 DDT_dom 331 379
IPR019787 Znf_PHD-finger 541 583
No external refs found!