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Aliases : SOC1, AGL20, ATSOC1
Description : MADS/AGL-type transcription factor & original description: CDS=1-252
Gene families : OG0000022 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Sacu_v1.1_s0006.g003429 | |
| Cluster | HCCA: Cluster_19 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00047p00190220 | AGL4, SEP2,... | RNA biosynthesis.transcriptional activation.MADS box... | 0.02 | OrthoFinder output from all 47 species | |
| AT3G57390 | AGL18 | AGAMOUS-like 18 | 0.01 | OrthoFinder output from all 47 species | |
| Adi_g045544 | No alias | MADS/AGL-type transcription factor & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Aev_g08780 | No alias | MADS/AGL-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aev_g17392 | AGL71 | MADS/AGL-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aev_g49663 | AGL16 | MADS/AGL-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aob_g19697 | AGL16 | MADS/AGL-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aop_g09954 | AGL2, SEP1 | MADS/AGL-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aspi01Gene49767.t1 | STK, AGL11,... | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aspi01Gene53310.t1 | AGL16, Aspi01Gene53310 | MADS/AGL-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0242.g059800 | SOC1, AGL20, ATSOC1 | MADS/AGL-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g16031 | SHP2, AGL5 | MADS/AGL-type transcription factor & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ceric.06G037700.1 | AGL65, Ceric.06G037700 | MADS/AGL-type transcription factor & original... | 0.01 | OrthoFinder output from all 47 species | |
| Ceric.12G051800.1 | GL19, AGL19,... | MADS/AGL-type transcription factor & original... | 0.01 | OrthoFinder output from all 47 species | |
| Dac_g20590 | AGL30 | MADS/AGL-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g50123 | AGL3, SEP4 | not classified & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Ehy_g21427 | STK, AGL11 | MADS/AGL-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ehy_g27385 | AGL21 | MADS/AGL-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| GSVIVT01008806001 | PI | RNA biosynthesis.transcriptional activation.MADS box... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01012250001 | AGL7, AP1 | RNA biosynthesis.transcriptional activation.MADS box... | 0.02 | OrthoFinder output from all 47 species | |
| GSVIVT01018450001 | AGL6 | RNA biosynthesis.transcriptional activation.MADS box... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01019883001 | GL19, AGL19 | RNA biosynthesis.transcriptional activation.MADS box... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01025945001 | STK, AGL11 | RNA biosynthesis.transcriptional activation.MADS box... | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os02g52340.1 | SVP, AGL22,... | transcription factor (MADS/AGL) | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os03g11614.1 | AGL2, SEP1,... | transcription factor (MADS/AGL) | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os04g49150.1 | AGL6, LOC_Os04g49150 | transcription factor (MADS/AGL) | 0.02 | OrthoFinder output from all 47 species | |
| Lfl_g26035 | AGL7, AP1 | MADS/AGL-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| MA_10289256g0010 | SOC1, AGL20, ATSOC1 | transcription factor (MADS/AGL) | 0.02 | OrthoFinder output from all 47 species | |
| MA_6544g0010 | STK, AGL11 | Floral homeotic protein AGAMOUS OS=Panax ginseng... | 0.02 | OrthoFinder output from all 47 species | |
| MA_75656g0010 | No alias | no hits & (original description: none) | 0.02 | OrthoFinder output from all 47 species | |
| MA_9972589g0010 | No alias | no hits & (original description: none) | 0.01 | OrthoFinder output from all 47 species | |
| Msp_g31321 | AGL16 | MADS/AGL-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Nbi_g18297 | AGL21 | MADS/AGL-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pir_g19814 | AGL10, CAL1, CAL | MADS/AGL-type transcription factor & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Pir_g46922 | SOC1, AGL20, ATSOC1 | MADS/AGL-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pnu_g25142 | AGL10, CAL1, CAL | MADS/AGL-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pnu_g25344 | AGL30 | MADS/AGL-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g04968 | AGL7, AP1 | MADS/AGL-type transcription factor & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Ppi_g17602 | AGL3, SEP4 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g06486 | No alias | MADS/AGL-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g26111 | No alias | MADS/AGL-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g26914 | No alias | MADS/AGL-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Smo437868 | AGL29 | RNA biosynthesis.transcriptional activation.MADS box... | 0.01 | OrthoFinder output from all 47 species | |
| Solyc02g065730.2.1 | AGL8, FUL, Solyc02g065730 | transcription factor (MADS/AGL) | 0.02 | OrthoFinder output from all 47 species | |
| Solyc04g005320.3.1 | AGL2, SEP1,... | transcription factor (MADS/AGL) | 0.02 | OrthoFinder output from all 47 species | |
| Solyc10g044965.1.1 | AGL21, Solyc10g044965 | transcription factor (MADS/AGL) | 0.02 | OrthoFinder output from all 47 species | |
| Spa_g04680 | AGL16 | MADS/AGL-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Spa_g26308 | AGL15 | MADS/AGL-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Tin_g00452 | AGL3, SEP4 | MADS/AGL-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Tin_g20318 | No alias | not classified & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Zm00001e000167_P005 | SOC1, AGL20,... | transcription factor (MADS/AGL) | 0.01 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000160 | phosphorelay signal transduction system | IEP | HCCA |
| MF | GO:0003677 | DNA binding | IEP | HCCA |
| MF | GO:0004180 | carboxypeptidase activity | IEP | HCCA |
| MF | GO:0004185 | serine-type carboxypeptidase activity | IEP | HCCA |
| CC | GO:0005694 | chromosome | IEP | HCCA |
| CC | GO:0005741 | mitochondrial outer membrane | IEP | HCCA |
| BP | GO:0006259 | DNA metabolic process | IEP | HCCA |
| BP | GO:0006260 | DNA replication | IEP | HCCA |
| BP | GO:0006270 | DNA replication initiation | IEP | HCCA |
| BP | GO:0006996 | organelle organization | IEP | HCCA |
| MF | GO:0008238 | exopeptidase activity | IEP | HCCA |
| BP | GO:0009892 | negative regulation of metabolic process | IEP | HCCA |
| BP | GO:0010605 | negative regulation of macromolecule metabolic process | IEP | HCCA |
| BP | GO:0010629 | negative regulation of gene expression | IEP | HCCA |
| BP | GO:0010639 | negative regulation of organelle organization | IEP | HCCA |
| BP | GO:0016043 | cellular component organization | IEP | HCCA |
| CC | GO:0019867 | outer membrane | IEP | HCCA |
| BP | GO:0031047 | RNA-mediated gene silencing | IEP | HCCA |
| CC | GO:0031966 | mitochondrial membrane | IEP | HCCA |
| CC | GO:0031968 | organelle outer membrane | IEP | HCCA |
| BP | GO:0032392 | DNA geometric change | IEP | HCCA |
| BP | GO:0032508 | DNA duplex unwinding | IEP | HCCA |
| BP | GO:0032780 | negative regulation of ATP-dependent activity | IEP | HCCA |
| BP | GO:0033043 | regulation of organelle organization | IEP | HCCA |
| BP | GO:0033044 | regulation of chromosome organization | IEP | HCCA |
| CC | GO:0042555 | MCM complex | IEP | HCCA |
| BP | GO:0043086 | negative regulation of catalytic activity | IEP | HCCA |
| BP | GO:0043462 | regulation of ATP-dependent activity | IEP | HCCA |
| BP | GO:0044092 | negative regulation of molecular function | IEP | HCCA |
| BP | GO:0048519 | negative regulation of biological process | IEP | HCCA |
| BP | GO:0048523 | negative regulation of cellular process | IEP | HCCA |
| BP | GO:0050789 | regulation of biological process | IEP | HCCA |
| BP | GO:0050790 | regulation of catalytic activity | IEP | HCCA |
| BP | GO:0051095 | regulation of helicase activity | IEP | HCCA |
| BP | GO:0051097 | negative regulation of helicase activity | IEP | HCCA |
| BP | GO:0051128 | regulation of cellular component organization | IEP | HCCA |
| BP | GO:0051129 | negative regulation of cellular component organization | IEP | HCCA |
| BP | GO:0051276 | chromosome organization | IEP | HCCA |
| BP | GO:0065007 | biological regulation | IEP | HCCA |
| BP | GO:0065009 | regulation of molecular function | IEP | HCCA |
| MF | GO:0070008 | serine-type exopeptidase activity | IEP | HCCA |
| BP | GO:0071103 | DNA conformation change | IEP | HCCA |
| BP | GO:0071840 | cellular component organization or biogenesis | IEP | HCCA |
| CC | GO:0098588 | bounding membrane of organelle | IEP | HCCA |
| BP | GO:1905462 | regulation of DNA duplex unwinding | IEP | HCCA |
| BP | GO:1905463 | negative regulation of DNA duplex unwinding | IEP | HCCA |
| BP | GO:1905774 | regulation of DNA helicase activity | IEP | HCCA |
| BP | GO:1905775 | negative regulation of DNA helicase activity | IEP | HCCA |
| BP | GO:2001251 | negative regulation of chromosome organization | IEP | HCCA |
No InterPro domains available for this sequence
| No external refs found! |