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  5. Sacu_v1.1_s0006.g003219

Sacu_v1.1_s0006.g003219 (VAC1, ECB2, ATECB2)


Aliases : VAC1, ECB2, ATECB2

Description : not classified & original description: CDS=1-1521


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0006.g003219
Cluster HCCA: Cluster_35

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00244370 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g05340... 0.03 OrthoFinder output from all 47 species
Adi_g004506 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g023974 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g033700 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g069256 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g080167 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g086463 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g43288 PTAC9, OSB2 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g36227 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g26992 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g16691 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene15587.t1 DOT4, Aspi01Gene15587 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene24968.t1 Aspi01Gene24968 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene44451.t2 Aspi01Gene44451 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene65851.t1 Aspi01Gene65851 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene70790.t1 Aspi01Gene70790 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0009.g011917 No alias not classified & original description: CDS=1-393 0.03 OrthoFinder output from all 47 species
Cba_g06794 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g19886 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g67809 OTP84 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g74872 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.10G062000.1 Ceric.10G062000 ssDNA-binding protein *(OSB) & original description:... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021035.24 No alias Pentatricopeptide repeat-containing protein At1g63080,... 0.01 OrthoFinder output from all 47 species
Cre12.g483700 OSB4 Cell cycle.organelle machineries.DNA... 0.01 OrthoFinder output from all 47 species
Dac_g03777 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g39198 OSB3 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g38857 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g13218 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g17259 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g47826 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g21772 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os01g45840.1 LOC_Os01g45840 Pentatricopeptide repeat-containing protein At2g36730... 0.02 OrthoFinder output from all 47 species
Len_g18487 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g49921 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07097 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g12347 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g08946 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g02438 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g28962 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g04362 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g16384 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g32611 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g57692 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57986 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g62128 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63629 LPA66 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g07527 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g13334 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g46631 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g53969 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g57859 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g12246 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g26703 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g53497 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g56707 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g08462 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g10691 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g44081 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
CC GO:0005739 mitochondrion IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP HCCA
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
MF GO:0051213 dioxygenase activity IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 302 350
IPR002885 Pentatricopeptide_repeat 21 67
IPR002885 Pentatricopeptide_repeat 124 170
IPR002885 Pentatricopeptide_repeat 182 249
IPR002885 Pentatricopeptide_repeat 379 401
IPR002885 Pentatricopeptide_repeat 407 430
IPR002885 Pentatricopeptide_repeat 98 121
No external refs found!