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  5. Sacu_v1.1_s0004.g002516

Sacu_v1.1_s0004.g002516


Description : VPS23-interacting protein *(SH3P2) & original description: CDS=1-1155


Gene families : OG0001132 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001132_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0004.g002516
Cluster HCCA: Cluster_55

Target Alias Description ECC score Gene Family Method Actions
Adi_g014073 No alias VPS23-interacting protein *(SH3P2) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0048.g030683 No alias VPS23-interacting protein *(SH3P2) & original... 0.03 OrthoFinder output from all 47 species
Dac_g04625 No alias VPS23-interacting protein *(SH3P2) & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g05447 No alias VPS23-interacting protein *(SH3P2) & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os10g36870.1 LOC_Os10g36870 VPS23-interacting protein (SH3P2) 0.03 OrthoFinder output from all 47 species
MA_10428425g0010 No alias SH3 domain-containing protein 2 OS=Arabidopsis thaliana... 0.01 OrthoFinder output from all 47 species
Pir_g10115 No alias VPS23-interacting protein *(SH3P2) & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g09080 No alias VPS23-interacting protein *(SH3P2) & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e004375_P001 Zm00001e004375 VPS23-interacting protein (SH3P2) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005672 transcription factor TFIIA complex IEP HCCA
CC GO:0005839 proteasome core complex IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006367 transcription initiation at RNA polymerase II promoter IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0032040 small-subunit processome IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
MF GO:0042393 histone binding IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR001452 SH3_domain 319 362
No external refs found!