1. Home
  2. Species
  3. Salvinia cucullata
  4. Sequence
  5. Sacu_v1.1_s0004.g002348

Sacu_v1.1_s0004.g002348


Description : E3 ubiquitin ligase *(SINA) & original description: CDS=122-1123


Gene families : OG0000462 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000462_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0004.g002348

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00116p00101320 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
Als_g13779 No alias E3 ubiquitin ligase *(SINA) & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g29925 No alias E3 ubiquitin ligase *(SINA) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene64614.t1 Aspi01Gene64614 E3 ubiquitin ligase *(SINA) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0051.g031385 No alias E3 ubiquitin ligase *(SINA) & original description: CDS=1947-2885 0.03 OrthoFinder output from all 47 species
Azfi_s0069.g036509 No alias E3 ubiquitin ligase *(SINA) & original description: CDS=60-1088 0.06 OrthoFinder output from all 47 species
Dcu_g51590 No alias E3 ubiquitin ligase *(SINA) & original description: none 0.01 OrthoFinder output from all 47 species
Ehy_g05575 No alias E3 ubiquitin ligase *(SINA) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01002268001 No alias E3 ubiquitin-protein ligase DIS1 OS=Oryza sativa subsp. japonica 0.01 OrthoFinder output from all 47 species
LOC_Os07g46560.1 LOC_Os07g46560 SINA-class E3 ligase 0.02 OrthoFinder output from all 47 species
MA_9566834g0010 No alias SINA-class E3 ligase 0.02 OrthoFinder output from all 47 species
Nbi_g04689 No alias E3 ubiquitin ligase *(SINA) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g10692 No alias E3 ubiquitin ligase *(SINA) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g13394 No alias E3 ubiquitin ligase *(SINA) & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e035769_P001 Zm00001e035769 SINA-class E3 ligase 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005737 cytoplasm IEA Interproscan
BP GO:0006511 ubiquitin-dependent protein catabolic process IEA Interproscan
BP GO:0007275 multicellular organism development IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
InterPro domains Description Start Stop
IPR018121 7-in-absentia-prot_TRAF-dom 127 326
No external refs found!