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  5. Sacu_v1.1_s0004.g002299

Sacu_v1.1_s0004.g002299


Description : transcriptional co-regulator *(Oberon) & original description: CDS=100-4422


Gene families : OG0000521 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000521_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0004.g002299

Target Alias Description ECC score Gene Family Method Actions
Adi_g058256 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g098683 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g06624 OBE1 transcriptional co-regulator *(Oberon) & original... 0.03 OrthoFinder output from all 47 species
Als_g27966 OBE2 transcriptional co-regulator *(Oberon) & original... 0.03 OrthoFinder output from all 47 species
Aob_g21192 No alias transcriptional co-regulator *(Oberon) & original... 0.03 OrthoFinder output from all 47 species
Aob_g27012 No alias transcriptional co-regulator *(Oberon) & original... 0.03 OrthoFinder output from all 47 species
Cba_g15338 No alias transcriptional co-regulator *(Oberon) & original... 0.05 OrthoFinder output from all 47 species
Dac_g04229 OBE2 transcriptional co-regulator *(Oberon) & original... 0.04 OrthoFinder output from all 47 species
Dcu_g06398 OBE2 transcriptional co-regulator *(Oberon) & original... 0.03 OrthoFinder output from all 47 species
Ehy_g07963 No alias transcriptional co-regulator *(Oberon) & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01032137001 No alias Protein OBERON 4 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Msp_g40697 OBE1 transcriptional co-regulator *(Oberon) & original... 0.06 OrthoFinder output from all 47 species
Ore_g10796 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g21141 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g46379 OBE2 transcriptional co-regulator *(Oberon) & original... 0.03 OrthoFinder output from all 47 species
Ppi_g08472 No alias transcriptional co-regulator *(Oberon) & original... 0.03 OrthoFinder output from all 47 species
Solyc05g054180.3.1 OBE2, Solyc05g054180 OBERON-like protein OS=Nicotiana benthamiana... 0.03 OrthoFinder output from all 47 species
Tin_g01081 OBE2 transcriptional co-regulator *(Oberon) & original... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0009314 response to radiation IEP HCCA
BP GO:0009416 response to light stimulus IEP HCCA
BP GO:0009581 detection of external stimulus IEP HCCA
BP GO:0009582 detection of abiotic stimulus IEP HCCA
BP GO:0009583 detection of light stimulus IEP HCCA
BP GO:0009584 detection of visible light IEP HCCA
BP GO:0009605 response to external stimulus IEP HCCA
BP GO:0009628 response to abiotic stimulus IEP HCCA
BP GO:0009719 response to endogenous stimulus IEP HCCA
BP GO:0009725 response to hormone IEP HCCA
BP GO:0009733 response to auxin IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010033 response to organic substance IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
BP GO:0042221 response to chemical IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0051606 detection of stimulus IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR032535 Oberon_cc 1317 1429
IPR032881 Oberon_PHD 1093 1216
No external refs found!