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Aliases : PSBC
Description : not classified & original description: CDS=1-627
Gene families : OG0003214 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003214_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Sacu_v1.1_s0004.g002255 | |
| Cluster | HCCA: Cluster_31 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s01196p00010070 | PSBC,... | Photosystem II CP43 reaction center protein OS=Carica papaya | 0.07 | OrthoFinder output from all 47 species | |
| AMTR_s04036p00005710 | evm_27.TU.AmTr_v1... | Photosystem II CP43 reaction center protein... | 0.07 | OrthoFinder output from all 47 species | |
| ATCG00280 | PSBC | photosystem II reaction center protein C | 0.17 | OrthoFinder output from all 47 species | |
| Aev_g04878 | PSBC | component *(PsbC/CP43) of PS-II reaction center complex... | 0.15 | OrthoFinder output from all 47 species | |
| Als_g01018 | PSBC | component *(PsbC/CP43) of PS-II reaction center complex... | 0.08 | OrthoFinder output from all 47 species | |
| Aob_g06735 | PSBC | component *(PsbC/CP43) of PS-II reaction center complex... | 0.06 | OrthoFinder output from all 47 species | |
| Cba_g32229 | PSBC | component *(PsbC/CP43) of PS-II reaction center complex... | 0.06 | OrthoFinder output from all 47 species | |
| Ceric.02G013100.1 | PSBC, Ceric.02G013100 | component *(PsbC/CP43) of PS-II reaction center complex... | 0.13 | OrthoFinder output from all 47 species | |
| Ceric.12G058500.1 | PSBC, Ceric.12G058500 | not classified & original description: pacid=50601680... | 0.11 | OrthoFinder output from all 47 species | |
| Ceric.12G087100.1 | PSBC, Ceric.12G087100 | not classified & original description: pacid=50602384... | 0.08 | OrthoFinder output from all 47 species | |
| Ceric.1Z161200.1 | PSBC, Ceric.1Z161200 | component *(PsbC/CP43) of PS-II reaction center complex... | 0.09 | OrthoFinder output from all 47 species | |
| Ceric.24G024100.1 | PSBC, Ceric.24G024100 | component *(PsbC/CP43) of PS-II reaction center complex... | 0.1 | OrthoFinder output from all 47 species | |
| Ceric.29G032200.1 | PSBC, Ceric.29G032200 | not classified & original description: pacid=50625880... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.33G023300.1 | PSBC, Ceric.33G023300 | component *(PsbC/CP43) of PS-II reaction center complex... | 0.05 | OrthoFinder output from all 47 species | |
| Ceric.33G053900.1 | PSBC, Ceric.33G053900 | not classified & original description: pacid=50607717... | 0.08 | OrthoFinder output from all 47 species | |
| Ceric.36G045000.1 | PSBC, Ceric.36G045000 | not classified & original description: pacid=50568984... | 0.14 | OrthoFinder output from all 47 species | |
| Ceric.38G009700.1 | PSBC, Ceric.38G009700 | component *(PsbC/CP43) of PS-II reaction center complex... | 0.12 | OrthoFinder output from all 47 species | |
| Ceric.38G040900.1 | PSBC, Ceric.38G040900 | not classified & original description: pacid=50580441... | 0.03 | OrthoFinder output from all 47 species | |
| Dac_g04293 | PSBC | component *(PsbC/CP43) of PS-II reaction center complex... | 0.05 | OrthoFinder output from all 47 species | |
| Dcu_g10666 | PSBC | component *(PsbC/CP43) of PS-II reaction center complex... | 0.11 | OrthoFinder output from all 47 species | |
| Dde_g30384 | PSBC | component *(PsbC/CP43) of PS-II reaction center complex... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01006662001 | PSBC | Photosystem II CP43 reaction center protein OS=Platanus... | 0.08 | OrthoFinder output from all 47 species | |
| GSVIVT01027074001 | No alias | No description available | 0.04 | OrthoFinder output from all 47 species | |
| Gb_06826 | PSBC | Photosystem II CP43 reaction center protein OS=Cycas... | 0.09 | OrthoFinder output from all 47 species | |
| Gb_11943 | PSBC | Photosystem II CP43 reaction center protein... | 0.08 | OrthoFinder output from all 47 species | |
| Gb_19153 | PSBC | Photosystem II CP43 reaction center protein... | 0.09 | OrthoFinder output from all 47 species | |
| Gb_19166 | PSBC | Photosystem II CP43 reaction center protein... | 0.05 | OrthoFinder output from all 47 species | |
| Gb_22672 | PSBC | Photosystem II CP43 reaction center protein... | 0.08 | OrthoFinder output from all 47 species | |
| LOC_Os02g24632.1 | PSBC, LOC_Os02g24632 | component PsbC/CP43 of PS-II reaction center complex | 0.14 | OrthoFinder output from all 47 species | |
| LOC_Os04g16874.1 | PSBC, LOC_Os04g16874 | component PsbC/CP43 of PS-II reaction center complex | 0.14 | OrthoFinder output from all 47 species | |
| LOC_Os10g21212.1 | PSBC, LOC_Os10g21212 | component PsbC/CP43 of PS-II reaction center complex | 0.13 | OrthoFinder output from all 47 species | |
| Len_g16437 | PSBC | component *(PsbC/CP43) of PS-II reaction center complex... | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g10242 | PSBC | component *(PsbC/CP43) of PS-II reaction center complex... | 0.09 | OrthoFinder output from all 47 species | |
| MA_9155188g0010 | PSBC | Photosystem II CP43 reaction center protein OS=Cuscuta... | 0.03 | OrthoFinder output from all 47 species | |
| Msp_g00655 | PSBC | component *(PsbC/CP43) of PS-II reaction center complex... | 0.04 | OrthoFinder output from all 47 species | |
| Nbi_g01251 | PSBC | component *(PsbC/CP43) of PS-II reaction center complex... | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g02105 | PSBC | component *(PsbC/CP43) of PS-II reaction center complex... | 0.12 | OrthoFinder output from all 47 species | |
| Pnu_g00846 | PSBC | component *(PsbC/CP43) of PS-II reaction center complex... | 0.04 | OrthoFinder output from all 47 species | |
| Ppi_g02376 | PSBC | component *(PsbC/CP43) of PS-II reaction center complex... | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g14692 | No alias | component *(PsbC/CP43) of PS-II reaction center complex... | 0.06 | OrthoFinder output from all 47 species | |
| Smo137689 | PSBC | Photosynthesis.photophosphorylation.photosystem II.PS-II... | 0.08 | OrthoFinder output from all 47 species | |
| Solyc00g230070.1.1 | PSBC, Solyc00g230070 | Photosystem II CP43 reaction center protein OS=Lepidium... | 0.04 | OrthoFinder output from all 47 species | |
| Solyc00g500054.1.1 | PSBC, Solyc00g500054 | component PsbD/D2 of PS-II reaction center complex.... | 0.13 | OrthoFinder output from all 47 species | |
| Solyc00g500136.1.1 | PSBC, Solyc00g500136 | component PsbD/D2 of PS-II reaction center complex.... | 0.13 | OrthoFinder output from all 47 species | |
| Solyc00g500206.1.1 | PSBC, Solyc00g500206 | component PsbD/D2 of PS-II reaction center complex.... | 0.13 | OrthoFinder output from all 47 species | |
| Solyc05g041230.1.1 | PSBC, Solyc05g041230 | Photosystem II CP43 reaction center protein... | 0.02 | OrthoFinder output from all 47 species | |
| Solyc07g009000.1.1 | PSBC, Solyc07g009000 | Photosystem II CP43 reaction center protein OS=Coffea... | 0.05 | OrthoFinder output from all 47 species | |
| Solyc12g027550.2.1 | PSBC, Solyc12g027550 | Photosystem II CP43 reaction center protein OS=Nicotiana... | 0.03 | OrthoFinder output from all 47 species | |
| Tin_g01229 | PSBC | component *(PsbC/CP43) of PS-II reaction center complex... | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e042042_P001 | PSBC, Zm00001e042042 | Photosystem II CP43 reaction center protein OS=Sorghum... | 0.05 | OrthoFinder output from all 47 species | |
| Zm00001e042157_P001 | PSBC, Zm00001e042157 | Photosystem II CP43 reaction center protein OS=Sorghum... | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e042269_P001 | PSBC, Zm00001e042269 | Photosystem II CP43 reaction center protein OS=Sorghum... | 0.03 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003677 | DNA binding | IEP | HCCA |
| MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | HCCA |
| MF | GO:0005507 | copper ion binding | IEP | HCCA |
| CC | GO:0005575 | cellular_component | IEP | HCCA |
| BP | GO:0006091 | generation of precursor metabolites and energy | IEP | HCCA |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0006351 | DNA-templated transcription | IEP | HCCA |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
| MF | GO:0008131 | primary amine oxidase activity | IEP | HCCA |
| BP | GO:0008150 | biological_process | IEP | HCCA |
| BP | GO:0008152 | metabolic process | IEP | HCCA |
| BP | GO:0009058 | biosynthetic process | IEP | HCCA |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | HCCA |
| BP | GO:0009308 | amine metabolic process | IEP | HCCA |
| CC | GO:0009521 | photosystem | IEP | HCCA |
| CC | GO:0009579 | thylakoid | IEP | HCCA |
| BP | GO:0009767 | photosynthetic electron transport chain | IEP | HCCA |
| BP | GO:0009987 | cellular process | IEP | HCCA |
| BP | GO:0015979 | photosynthesis | IEP | HCCA |
| CC | GO:0016020 | membrane | IEP | HCCA |
| BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
| MF | GO:0016168 | chlorophyll binding | IEP | HCCA |
| MF | GO:0016638 | oxidoreductase activity, acting on the CH-NH2 group of donors | IEP | HCCA |
| MF | GO:0016641 | oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor | IEP | HCCA |
| MF | GO:0016779 | nucleotidyltransferase activity | IEP | HCCA |
| BP | GO:0018130 | heterocycle biosynthetic process | IEP | HCCA |
| BP | GO:0019438 | aromatic compound biosynthetic process | IEP | HCCA |
| BP | GO:0019684 | photosynthesis, light reaction | IEP | HCCA |
| BP | GO:0022900 | electron transport chain | IEP | HCCA |
| BP | GO:0032774 | RNA biosynthetic process | IEP | HCCA |
| CC | GO:0032991 | protein-containing complex | IEP | HCCA |
| MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | HCCA |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0034654 | nucleobase-containing compound biosynthetic process | IEP | HCCA |
| BP | GO:0044237 | cellular metabolic process | IEP | HCCA |
| BP | GO:0044249 | cellular biosynthetic process | IEP | HCCA |
| BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | HCCA |
| BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
| MF | GO:0046906 | tetrapyrrole binding | IEP | HCCA |
| MF | GO:0048038 | quinone binding | IEP | HCCA |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| BP | GO:0097659 | nucleic acid-templated transcription | IEP | HCCA |
| MF | GO:0097747 | RNA polymerase activity | IEP | HCCA |
| CC | GO:0098796 | membrane protein complex | IEP | HCCA |
| CC | GO:0110165 | cellular anatomical entity | IEP | HCCA |
| MF | GO:0140098 | catalytic activity, acting on RNA | IEP | HCCA |
| MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
| BP | GO:1901362 | organic cyclic compound biosynthetic process | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
| BP | GO:1901576 | organic substance biosynthetic process | IEP | HCCA |
No InterPro domains available for this sequence
| No external refs found! |