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  5. Sacu_v1.1_s0004.g002237

Sacu_v1.1_s0004.g002237


Description : not classified & original description: CDS=481-2598


Gene families : OG0000974 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000974_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0004.g002237

Target Alias Description ECC score Gene Family Method Actions
Adi_g059056 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g08810 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g10193 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g22725 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.24G027000.1 Ceric.24G027000 not classified & original description: pacid=50628560... 0.02 OrthoFinder output from all 47 species
Ehy_g08606 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g44638 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g10469 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc04g080360.4.1 Solyc04g080360 Probable methyltransferase PMT28 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Solyc06g051000.2.1 Solyc06g051000 Probable methyltransferase PMT22 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008168 methyltransferase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
BP GO:0006354 DNA-templated transcription elongation IEP HCCA
BP GO:0006368 transcription elongation by RNA polymerase II IEP HCCA
CC GO:0008023 transcription elongation factor complex IEP HCCA
BP GO:0016197 endosomal transport IEP HCCA
BP GO:0016482 cytosolic transport IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
CC GO:0030906 retromer, cargo-selective complex IEP HCCA
BP GO:0042147 retrograde transport, endosome to Golgi IEP HCCA
CC GO:0070449 elongin complex IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
InterPro domains Description Start Stop
IPR004159 Put_SAM_MeTrfase 185 692
No external refs found!