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  5. Sacu_v1.1_s0004.g002092

Sacu_v1.1_s0004.g002092 (APUM12, PUM12)


Aliases : APUM12, PUM12

Description : not classified & original description: CDS=226-2811


Gene families : OG0000858 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000858_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0004.g002092

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00060p00178160 PUM7, APUM7,... Putative pumilio homolog 7, chloroplastic OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AT5G56510 APUM12, PUM12 pumilio 12 0.03 OrthoFinder output from all 47 species
Azfi_s0040.g026500 APUM12, PUM12 not classified & original description: CDS=1-2874 0.01 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020878.26 PUM7, APUM7 Pumilio homolog 12 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Dde_g13713 APUM12, PUM12 not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os12g31000.1 PUM7, APUM7,... Putative pumilio homolog 7, chloroplastic OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Pir_g20091 APUM12, PUM12 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g20896 APUM12, PUM12 not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0030915 Smc5-Smc6 complex IEP HCCA
CC GO:0106068 SUMO ligase complex IEP HCCA
InterPro domains Description Start Stop
IPR001313 Pumilio_RNA-bd_rpt 583 613
IPR001313 Pumilio_RNA-bd_rpt 621 653
IPR001313 Pumilio_RNA-bd_rpt 547 581
IPR001313 Pumilio_RNA-bd_rpt 732 749
IPR001313 Pumilio_RNA-bd_rpt 659 689
IPR001313 Pumilio_RNA-bd_rpt 806 826
IPR001313 Pumilio_RNA-bd_rpt 694 727
IPR001313 Pumilio_RNA-bd_rpt 766 800
No external refs found!