Sacu_v1.1_s0003.g001949

Description : component *(eL19) of large ribosomal-subunit (LSU) proteome & original description: CDS=1-621

Gene families : OG0001435 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001435_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sacu_v1.1_s0003.g001949

Target	Alias	Description	ECC score	Gene Family Method
AT1G02780	emb2386	Ribosomal protein L19e family protein	0.04	OrthoFinder output from all 47 species
Aop_g03394	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Aop_g14682	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Azfi_s0006.g009570	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Ceric.07G087100.1	Ceric.07G087100	component *(eL19) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ceric.17G056200.1	Ceric.17G056200	component *(eL19) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021181.1	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.04	OrthoFinder output from all 47 species
Dcu_g35194	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Dde_g48535	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
GSVIVT01028052001	emb2386	Protein biosynthesis.cytosolic ribosome.large subunit...	0.05	OrthoFinder output from all 47 species
GSVIVT01035096001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.05	OrthoFinder output from all 47 species
Gb_23171	emb2386	component RPL19 of LSU proteome component	0.04	OrthoFinder output from all 47 species
LOC_Os03g21940.1	emb2386, LOC_Os03g21940	component RPL19 of LSU proteome component	0.03	OrthoFinder output from all 47 species
LOC_Os03g38260.1	LOC_Os03g38260	component RPL19 of LSU proteome component	0.02	OrthoFinder output from all 47 species
Lfl_g06864	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
MA_22977g0010	emb2386	component RPL19 of LSU proteome component	0.02	OrthoFinder output from all 47 species
Mp7g09050.1	No alias	component RPL19 of LSU proteome component	0.06	OrthoFinder output from all 47 species
Msp_g18967	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Pir_g25704	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Pp3c15_5130V3.1	Pp3c15_5130	Ribosomal protein L19e family protein	0.03	OrthoFinder output from all 47 species
Pp3c16_410V3.1	Pp3c16_410	Ribosomal protein L19e family protein	0.04	OrthoFinder output from all 47 species
Pp3c21_11230V3.1	Pp3c21_11230	Ribosomal protein L19e family protein	0.04	OrthoFinder output from all 47 species
Pp3c22_9980V3.1	Pp3c22_9980	Ribosomal protein L19e family protein	0.01	OrthoFinder output from all 47 species
Pp3c9_14720V3.1	Pp3c9_14720	Ribosomal protein L19e family protein	0.03	OrthoFinder output from all 47 species
Sam_g25834	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Sam_g38378	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Smo271656	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	OrthoFinder output from all 47 species
Solyc06g009210.4.1	emb2386, Solyc06g009210	component RPL19 of LSU proteome component	0.04	OrthoFinder output from all 47 species
Solyc09g075430.3.1	Solyc09g075430	component RPL19 of LSU proteome component	0.04	OrthoFinder output from all 47 species
Spa_g11535	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Spa_g11536	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Spa_g11537	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Tin_g03158	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Zm00001e013683_P001	emb2386, Zm00001e013683	component RPL19 of LSU proteome component	0.02	OrthoFinder output from all 47 species
Zm00001e025202_P001	Zm00001e025202	component RPL19 of LSU proteome component	0.04	OrthoFinder output from all 47 species
Zm00001e036280_P001	Zm00001e036280	component RPL19 of LSU proteome component	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004590	orotidine-5'-phosphate decarboxylase activity	IEP	HCCA
CC	GO:0005694	chromosome	IEP	HCCA
BP	GO:0006206	pyrimidine nucleobase metabolic process	IEP	HCCA
BP	GO:0006207	'de novo' pyrimidine nucleobase biosynthetic process	IEP	HCCA
BP	GO:0009112	nucleobase metabolic process	IEP	HCCA
MF	GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups	IEP	HCCA
MF	GO:0016831	carboxy-lyase activity	IEP	HCCA
MF	GO:0019843	rRNA binding	IEP	HCCA
BP	GO:0019856	pyrimidine nucleobase biosynthetic process	IEP	HCCA
BP	GO:0046112	nucleobase biosynthetic process	IEP	HCCA
BP	GO:0072527	pyrimidine-containing compound metabolic process	IEP	HCCA
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000196	Ribosomal_L19/L19e	4	145

External Links

No external refs found!

Sacu_v1.1_s0003.g001949

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation