AMTR_s00148p00070260 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00148.44

Description : Pentatricopeptide repeat-containing protein At2g37230 OS=Arabidopsis thaliana


Gene families : OG_01_0010488 (Archaeplastida) Phylogenetic Tree(s): OG_01_0010488_tree ,
OG_02_0010960 (LandPlants) Phylogenetic Tree(s): OG_02_0010960_tree ,
OG_03_0010943 (SeedPlants) Phylogenetic Tree(s): OG_03_0010943_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00148p00070260
Cluster HCCA: Cluster_268

Target Alias Description ECC score Gene Family Method Actions
Solyc12g019290.1.1 No alias Pentatricopeptide repeat-containing protein At2g37230... 0.05 Archaeplastida
Zm00001e013429_P001 No alias Pentatricopeptide repeat-containing protein At2g37230... 0.02 Archaeplastida
AT2G37230 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 LandPlants
LOC_Os02g02020.1 No alias Pentatricopeptide repeat-containing protein At2g37230... 0.02 LandPlants
Solyc12g019290.1.1 No alias Pentatricopeptide repeat-containing protein At2g37230... 0.04 LandPlants
Zm00001e013429_P001 No alias Pentatricopeptide repeat-containing protein At2g37230... 0.02 LandPlants
AT2G37230 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 SeedPlants
LOC_Os02g02020.1 No alias Pentatricopeptide repeat-containing protein At2g37230... 0.02 SeedPlants
Solyc12g019290.1.1 No alias Pentatricopeptide repeat-containing protein At2g37230... 0.04 SeedPlants
Zm00001e013429_P001 No alias Pentatricopeptide repeat-containing protein At2g37230... 0.02 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 507 536
IPR002885 Pentatricopeptide_repeat 186 214
IPR002885 Pentatricopeptide_repeat 361 389
IPR002885 Pentatricopeptide_repeat 432 460
IPR002885 Pentatricopeptide_repeat 397 423
IPR002885 Pentatricopeptide_repeat 473 503
IPR002885 Pentatricopeptide_repeat 216 264
IPR002885 Pentatricopeptide_repeat 286 334
No external refs found!