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  5. Sacu_v1.1_s0003.g001850

Sacu_v1.1_s0003.g001850


Description : not classified & original description: CDS=1-1887


Gene families : OG0000273 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000273_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0003.g001850
Cluster HCCA: Cluster_43

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00071p00051500 evm_27.TU.AmTr_v1... Vesicle trafficking.clathrin coated vesicle (CCV)... 0.02 OrthoFinder output from all 47 species
AT1G03050 No alias ENTH/ANTH/VHS superfamily protein 0.04 OrthoFinder output from all 47 species
Adi_g080788 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g17618 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g01890 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g21349 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.04G022700.1 Ceric.04G022700 not classified & original description: pacid=50630868... 0.03 OrthoFinder output from all 47 species
Ceric.04G099900.1 Ceric.04G099900 not classified & original description: pacid=50631667... 0.04 OrthoFinder output from all 47 species
Ceric.14G012300.1 Ceric.14G012300 not classified & original description: pacid=50634093... 0.03 OrthoFinder output from all 47 species
Dac_g11800 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g30673 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g06797 No alias accessory protein *(PlCALM3) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01015603001 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.03 OrthoFinder output from all 47 species
GSVIVT01029746001 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.04 OrthoFinder output from all 47 species
LOC_Os02g55970.1 LOC_Os02g55970 Putative clathrin assembly protein At5g35200... 0.03 OrthoFinder output from all 47 species
LOC_Os03g16800.1 LOC_Os03g16800 component CAP1/ECA4 of TPLATE AP-2 co-adaptor complex 0.03 OrthoFinder output from all 47 species
LOC_Os05g35160.1 LOC_Os05g35160 ECA1/2 clathrin coated vesicle adaptor protein 0.03 OrthoFinder output from all 47 species
Lfl_g07050 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g13944 No alias accessory protein *(PlCALM3) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g11926 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g07886 No alias accessory protein *(PlCALM3) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g07860 No alias accessory protein *(PlCALM3) & original description: none 0.02 OrthoFinder output from all 47 species
Solyc02g043810.4.1 Solyc02g043810 ECA1/2 clathrin coated vesicle adaptor protein 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005543 phospholipid binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006694 steroid biosynthetic process IEP HCCA
BP GO:0008202 steroid metabolic process IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0009719 response to endogenous stimulus IEP HCCA
BP GO:0009725 response to hormone IEP HCCA
BP GO:0009733 response to auxin IEP HCCA
BP GO:0010033 response to organic substance IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030118 clathrin coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030125 clathrin vesicle coat IEP HCCA
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP HCCA
CC GO:0030132 clathrin coat of coated pit IEP HCCA
BP GO:0042221 response to chemical IEP HCCA
CC GO:0098797 plasma membrane protein complex IEP HCCA
InterPro domains Description Start Stop
IPR011417 ANTH_dom 34 325
No external refs found!