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  5. Sacu_v1.1_s0003.g001814

Sacu_v1.1_s0003.g001814 (PRP39)


Aliases : PRP39

Description : pre-mRNA-processing protein *(PRP39) & original description: CDS=1-2529


Gene families : OG0002297 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002297_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0003.g001814

Target Alias Description ECC score Gene Family Method Actions
Adi_g018948 PRP39 pre-mRNA-processing protein *(PRP39) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g087387 AT PRP39-2, PRP39-2 pre-mRNA-processing protein *(PRP39) & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g25483 PRP39 pre-mRNA-processing protein *(PRP39) & original description: none 0.03 OrthoFinder output from all 47 species
Len_g23571 PRP39 pre-mRNA-processing protein *(PRP39) & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g19659 PRP39 pre-mRNA-processing protein *(PRP39) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g11835 No alias pre-mRNA-processing protein *(PRP39) & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g38613 PRP39 pre-mRNA-processing protein *(PRP39) & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g56288 PRP39 pre-mRNA-processing protein *(PRP39) & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e000702_P004 PRP39, Zm00001e000702 pre-mRNA-processing protein (PRP39) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004057 arginyltransferase activity IEP HCCA
MF GO:0004066 asparagine synthase (glutamine-hydrolyzing) activity IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0006405 RNA export from nucleus IEP HCCA
BP GO:0006406 mRNA export from nucleus IEP HCCA
BP GO:0006528 asparagine metabolic process IEP HCCA
BP GO:0006529 asparagine biosynthetic process IEP HCCA
BP GO:0006813 potassium ion transport IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0009066 aspartate family amino acid metabolic process IEP HCCA
BP GO:0009067 aspartate family amino acid biosynthetic process IEP HCCA
BP GO:0015931 nucleobase-containing compound transport IEP HCCA
BP GO:0016598 protein arginylation IEP HCCA
MF GO:0016755 aminoacyltransferase activity IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP HCCA
BP GO:0016973 poly(A)+ mRNA export from nucleus IEP HCCA
BP GO:0050657 nucleic acid transport IEP HCCA
BP GO:0050658 RNA transport IEP HCCA
BP GO:0051028 mRNA transport IEP HCCA
BP GO:0051168 nuclear export IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051236 establishment of RNA localization IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!