Sacu_v1.1_s0003.g001736 (PUB39)

Aliases : PUB39

Description : U-Box-group-II E3 ubiquitin ligase & original description: CDS=1-1899

Gene families : OG0004266 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004266_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sacu_v1.1_s0003.g001736

Target	Alias	Description	ECC score	Gene Family Method
AT5G65200	PUB38, ATPUB38	plant U-box 38	0.03	OrthoFinder output from all 47 species
Als_g29023	PUB38, ATPUB38	U-Box-group-II E3 ubiquitin ligase & original description: none	0.04	OrthoFinder output from all 47 species
Aop_g04662	PUB38, ATPUB38	U-Box-group-II E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.02G042800.1	ATPUB45, PUB45,...	U-Box-group-II E3 ubiquitin ligase & original...	0.04	OrthoFinder output from all 47 species
Ceric.02G044300.1	ATPUB45, PUB45,...	U-Box-group-II E3 ubiquitin ligase & original...	0.03	OrthoFinder output from all 47 species
Ehy_g03795	PUB39	U-Box-group-II E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Gb_13006	PUB38, ATPUB38	E3 ubiquitin ligase (PUB)	0.02	OrthoFinder output from all 47 species
MA_252170g0010	PUB38, ATPUB38	E3 ubiquitin ligase (PUB)	0.02	OrthoFinder output from all 47 species
Smo90666	PUB39	U-box domain-containing protein 38 OS=Arabidopsis thaliana	0.04	OrthoFinder output from all 47 species
Solyc02g087200.2.1	Solyc02g087200	E3 ubiquitin ligase (PUB)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0006508	proteolysis	IEP	HCCA
BP	GO:0006813	potassium ion transport	IEP	HCCA
MF	GO:0008233	peptidase activity	IEP	HCCA
BP	GO:0009719	response to endogenous stimulus	IEP	HCCA
BP	GO:0009725	response to hormone	IEP	HCCA
BP	GO:0009733	response to auxin	IEP	HCCA
BP	GO:0010033	response to organic substance	IEP	HCCA
MF	GO:0010181	FMN binding	IEP	HCCA
MF	GO:0015079	potassium ion transmembrane transporter activity	IEP	HCCA
BP	GO:0042221	response to chemical	IEP	HCCA
BP	GO:0071805	potassium ion transmembrane transport	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000225	Armadillo	392	429
IPR003613	Ubox_domain	9	73

External Links

No external refs found!