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  5. Sacu_v1.1_s0003.g001482

Sacu_v1.1_s0003.g001482


Description : not classified & original description: CDS=1-705


Gene families : OG0000108 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000108_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0003.g001482
Cluster HCCA: Cluster_2

Target Alias Description ECC score Gene Family Method Actions
Als_g15831 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g22006 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene14640.t1 Aspi01Gene14640 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene44800.t1 Aspi01Gene44800 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Cba_g13888 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g28248 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Cba_g78562 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g41908 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g64499 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0005.g002780 No alias not classified & original description: CDS=1-534 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004592 pantoate-beta-alanine ligase activity IEP HCCA
BP GO:0006575 cellular modified amino acid metabolic process IEP HCCA
BP GO:0006766 vitamin metabolic process IEP HCCA
BP GO:0006767 water-soluble vitamin metabolic process IEP HCCA
BP GO:0009110 vitamin biosynthetic process IEP HCCA
BP GO:0015939 pantothenate metabolic process IEP HCCA
BP GO:0015940 pantothenate biosynthetic process IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016881 acid-amino acid ligase activity IEP HCCA
BP GO:0032787 monocarboxylic acid metabolic process IEP HCCA
BP GO:0042364 water-soluble vitamin biosynthetic process IEP HCCA
BP GO:0042398 cellular modified amino acid biosynthetic process IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
BP GO:0072330 monocarboxylic acid biosynthetic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!