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  5. Sacu_v1.1_s0003.g001460

Sacu_v1.1_s0003.g001460


Description : RING-H2-class ATL-subclass E3 ubiquitin ligase & original description: CDS=1-750


Gene families : OG0000008 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0003.g001460
Cluster HCCA: Cluster_47

Target Alias Description ECC score Gene Family Method Actions
Aev_g07783 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Aev_g33392 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Ceric.21G003900.1 ATL6, Ceric.21G003900 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020684.6 SDIR1 Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
Mp8g15250.1 No alias RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
Nbi_g05205 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Ppi_g04206 ATL6 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Sam_g15426 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Spa_g11355 No alias E3 ubiquitin ligase *(BRH) & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004045 aminoacyl-tRNA hydrolase activity IEP HCCA
CC GO:0005789 endoplasmic reticulum membrane IEP HCCA
BP GO:0006354 DNA-templated transcription elongation IEP HCCA
BP GO:0006368 transcription elongation by RNA polymerase II IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
CC GO:0008023 transcription elongation factor complex IEP HCCA
BP GO:0009314 response to radiation IEP HCCA
BP GO:0009411 response to UV IEP HCCA
BP GO:0009416 response to light stimulus IEP HCCA
BP GO:0009628 response to abiotic stimulus IEP HCCA
MF GO:0015291 secondary active transmembrane transporter activity IEP HCCA
MF GO:0015293 symporter activity IEP HCCA
BP GO:0016570 histone modification IEP HCCA
CC GO:0016593 Cdc73/Paf1 complex IEP HCCA
MF GO:0022804 active transmembrane transporter activity IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 116 160
No external refs found!