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  5. Sacu_v1.1_s0002.g001272

Sacu_v1.1_s0002.g001272


Description : E3 ubiquitin ligase component *(LTN1) of Ribosome-associated Quality Control (RQC) complex & original description: CDS=1054-1536


Gene families : OG0007242 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007242_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0002.g001272
Cluster HCCA: Cluster_8

Target Alias Description ECC score Gene Family Method Actions
Adi_g013337 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006488 dolichol-linked oligosaccharide biosynthetic process IEP HCCA
BP GO:0006490 oligosaccharide-lipid intermediate biosynthetic process IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
MF GO:0031267 small GTPase binding IEP HCCA
MF GO:0051020 GTPase binding IEP HCCA
InterPro domains Description Start Stop
IPR000408 Reg_chr_condens 109 157
IPR001841 Znf_RING 69 117
IPR000408 Reg_chr_condens 6 60
No external refs found!