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Aliases : PSBD
Description : not classified & original description: CDS=1-297
Gene families : OG0001107 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001107_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Sacu_v1.1_s0002.g001231 | |
| Cluster | HCCA: Cluster_31 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00004p00270980 | PSBA | Photosynthesis.photophosphorylation.photosystem II.PS-II... | 0.07 | OrthoFinder output from all 47 species | |
| AMTR_s00071p00011330 | PSBA | Photosynthesis.photophosphorylation.photosystem II.PS-II... | 0.07 | OrthoFinder output from all 47 species | |
| AMTR_s00090p00098500 | PSBA | Photosystem II protein D1 OS=Nephroselmis olivacea | 0.02 | OrthoFinder output from all 47 species | |
| AMTR_s00102p00106890 | PSBD,... | Photosystem II D2 protein OS=Amborella trichopoda | 0.07 | OrthoFinder output from all 47 species | |
| AMTR_s00172p00027480 | PSBA | Photosystem II protein D1 OS=Amborella trichopoda | 0.07 | OrthoFinder output from all 47 species | |
| AMTR_s00172p00030370 | PSBA | Photosystem II protein D1 OS=Amborella trichopoda | 0.07 | OrthoFinder output from all 47 species | |
| AMTR_s00172p00038240 | PSBA | Photosystem II protein D1 OS=Amborella trichopoda | 0.07 | OrthoFinder output from all 47 species | |
| AMTR_s00172p00040120 | PSBA | Photosystem II protein D1 OS=Amborella trichopoda | 0.07 | OrthoFinder output from all 47 species | |
| AMTR_s00390p00002060 | PSBA | Photosynthesis.photophosphorylation.photosystem II.PS-II... | 0.07 | OrthoFinder output from all 47 species | |
| ATCG00020 | PSBA | photosystem II reaction center protein A | 0.16 | OrthoFinder output from all 47 species | |
| ATCG00270 | PSBD | photosystem II reaction center protein D | 0.09 | OrthoFinder output from all 47 species | |
| Aev_g03797 | PSBA | component *(PsbA/D1) of PS-II reaction center complex &... | 0.12 | OrthoFinder output from all 47 species | |
| Aev_g33560 | PSBD | component *(PsbD/D2) of PS-II reaction center complex &... | 0.15 | OrthoFinder output from all 47 species | |
| Als_g05104 | PSBD | component *(PsbD/D2) of PS-II reaction center complex &... | 0.09 | OrthoFinder output from all 47 species | |
| Als_g08173 | PSBA | component *(PsbA/D1) of PS-II reaction center complex &... | 0.04 | OrthoFinder output from all 47 species | |
| Aob_g01728 | PSBA | component *(PsbA/D1) of PS-II reaction center complex &... | 0.06 | OrthoFinder output from all 47 species | |
| Azfi_s0026.g023368 | No alias | not classified & original description: CDS=1-396 | 0.04 | OrthoFinder output from all 47 species | |
| Azfi_s0192.g057044 | No alias | not classified & original description: CDS=1-339 | 0.05 | OrthoFinder output from all 47 species | |
| Cba_g05717 | PSBA | component *(PsbA/D1) of PS-II reaction center complex &... | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g74869 | PSBD | component *(PsbD/D2) of PS-II reaction center complex &... | 0.05 | OrthoFinder output from all 47 species | |
| Ceric.01G054300.1 | PSBA, Ceric.01G054300 | not classified & original description: pacid=50591444... | 0.07 | OrthoFinder output from all 47 species | |
| Ceric.01G066400.1 | PSBA, Ceric.01G066400 | not classified & original description: pacid=50590620... | 0.11 | OrthoFinder output from all 47 species | |
| Ceric.02G016000.1 | PSBD, Ceric.02G016000 | component *(PsbD/D2) of PS-II reaction center complex &... | 0.1 | OrthoFinder output from all 47 species | |
| Ceric.02G046500.1 | PSBA, Ceric.02G046500 | not classified & original description: pacid=50584544... | 0.12 | OrthoFinder output from all 47 species | |
| Ceric.05G039300.1 | PSBA, Ceric.05G039300 | component *(PsbA/D1) of PS-II reaction center complex &... | 0.05 | OrthoFinder output from all 47 species | |
| Ceric.05G040100.1 | PSBA, Ceric.05G040100 | component *(PsbA/D1) of PS-II reaction center complex &... | 0.08 | OrthoFinder output from all 47 species | |
| Ceric.05G043300.1 | PSBA, Ceric.05G043300 | component *(PsbA/D1) of PS-II reaction center complex &... | 0.1 | OrthoFinder output from all 47 species | |
| Ceric.06G028100.1 | PSBA, Ceric.06G028100 | not classified & original description: pacid=50620820... | 0.08 | OrthoFinder output from all 47 species | |
| Ceric.07G016000.1 | PSBA, Ceric.07G016000 | not classified & original description: pacid=50626123... | 0.11 | OrthoFinder output from all 47 species | |
| Ceric.07G060900.1 | PSBA, Ceric.07G060900 | component *(PsbA/D1) of PS-II reaction center complex &... | 0.11 | OrthoFinder output from all 47 species | |
| Ceric.09G049700.1 | PSBA, Ceric.09G049700 | component *(PsbA/D1) of PS-II reaction center complex &... | 0.1 | OrthoFinder output from all 47 species | |
| Ceric.12G058600.1 | PSBA, Ceric.12G058600 | not classified & original description: pacid=50600847... | 0.08 | OrthoFinder output from all 47 species | |
| Ceric.13G053600.1 | PSBA, Ceric.13G053600 | not classified & original description: pacid=50635334... | 0.09 | OrthoFinder output from all 47 species | |
| Ceric.16G061600.1 | PSBA, Ceric.16G061600 | not classified & original description: pacid=50589682... | 0.09 | OrthoFinder output from all 47 species | |
| Ceric.18G054200.1 | PSBA, Ceric.18G054200 | component *(PsbA/D1) of PS-II reaction center complex &... | 0.07 | OrthoFinder output from all 47 species | |
| Ceric.1Z020700.1 | PSBA, Ceric.1Z020700 | component *(PsbA/D1) of PS-II reaction center complex &... | 0.1 | OrthoFinder output from all 47 species | |
| Ceric.1Z022800.1 | PSBD, Ceric.1Z022800 | component *(PsbD/D2) of PS-II reaction center complex &... | 0.08 | OrthoFinder output from all 47 species | |
| Ceric.22G078100.1 | PSBA, Ceric.22G078100 | component *(PsbA/D1) of PS-II reaction center complex &... | 0.1 | OrthoFinder output from all 47 species | |
| Ceric.23G039900.1 | PSBA, Ceric.23G039900 | not classified & original description: pacid=50611232... | 0.05 | OrthoFinder output from all 47 species | |
| Ceric.23G081300.1 | PSBD, Ceric.23G081300 | component *(PsbD/D2) of PS-II reaction center complex &... | 0.12 | OrthoFinder output from all 47 species | |
| Ceric.28G022100.1 | PSBA, Ceric.28G022100 | not classified & original description: pacid=50570095... | 0.12 | OrthoFinder output from all 47 species | |
| Ceric.29G003100.1 | PSBA, Ceric.29G003100 | component *(PsbA/D1) of PS-II reaction center complex &... | 0.1 | OrthoFinder output from all 47 species | |
| Ceric.29G032300.1 | PSBD, Ceric.29G032300 | component *(PsbD/D2) of PS-II reaction center complex &... | 0.12 | OrthoFinder output from all 47 species | |
| Ceric.29G050900.1 | PSBA, Ceric.29G050900 | not classified & original description: pacid=50624438... | 0.11 | OrthoFinder output from all 47 species | |
| Ceric.31G004800.1 | PSBA, Ceric.31G004800 | not classified & original description: pacid=50574421... | 0.09 | OrthoFinder output from all 47 species | |
| Ceric.33G023400.1 | PSBD, Ceric.33G023400 | not classified & original description: pacid=50607236... | 0.04 | OrthoFinder output from all 47 species | |
| Ceric.33G038500.1 | PSBA, Ceric.33G038500 | component *(PsbA/D1) of PS-II reaction center complex &... | 0.09 | OrthoFinder output from all 47 species | |
| Ceric.34G004800.1 | PSBA, Ceric.34G004800 | component *(PsbA/D1) of PS-II reaction center complex &... | 0.09 | OrthoFinder output from all 47 species | |
| Ceric.35G011500.1 | PSBA, Ceric.35G011500 | not classified & original description: pacid=50581506... | 0.09 | OrthoFinder output from all 47 species | |
| Ceric.36G044800.1 | PSBA, Ceric.36G044800 | not classified & original description: pacid=50568302... | 0.12 | OrthoFinder output from all 47 species | |
| Dcu_g24049 | PSBA | component *(PsbA/D1) of PS-II reaction center complex &... | 0.04 | OrthoFinder output from all 47 species | |
| Dde_g00539 | PSBA | component *(PsbA/D1) of PS-II reaction center complex &... | 0.05 | OrthoFinder output from all 47 species | |
| Ehy_g02156 | PSBA | component *(PsbA/D1) of PS-II reaction center complex &... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01010924001 | PSBD | Photosystem II D2 protein OS=Vitis vinifera | 0.05 | OrthoFinder output from all 47 species | |
| GSVIVT01016441001 | PSBA | Photosystem II protein D1 OS=Vitis vinifera | 0.05 | OrthoFinder output from all 47 species | |
| GSVIVT01029661001 | PSBD | Photosystem II D2 protein OS=Vitis vinifera | 0.08 | OrthoFinder output from all 47 species | |
| Gb_03955 | PSBA | Photosystem II protein D1 OS=Cryptomeria japonica... | 0.08 | OrthoFinder output from all 47 species | |
| Gb_06825 | PSBD | no description available(sp|q85ac9|psbd_antag : 421.0) | 0.02 | OrthoFinder output from all 47 species | |
| Gb_09035 | PSBA | Photosystem II protein D1 OS=Cryptomeria japonica... | 0.08 | OrthoFinder output from all 47 species | |
| Gb_18604 | PSBA | Photosystem II protein D1 OS=Adiantum capillus-veneris... | 0.08 | OrthoFinder output from all 47 species | |
| Gb_20129 | PSBA | Photosystem II protein D1 OS=Zygnema circumcarinatum... | 0.04 | OrthoFinder output from all 47 species | |
| Gb_23102 | PSBA | no description available(sp|q85bh5|psba_antag : 432.0) | 0.04 | OrthoFinder output from all 47 species | |
| Gb_26289 | PSBA | no description available(sp|q85bh5|psba_antag : 489.0) | 0.05 | OrthoFinder output from all 47 species | |
| LOC_Os02g24634.1 | PSBD, LOC_Os02g24634 | component PsbD/D2 of PS-II reaction center complex | 0.06 | OrthoFinder output from all 47 species | |
| LOC_Os04g16872.1 | PSBD, LOC_Os04g16872 | component PsbD/D2 of PS-II reaction center complex | 0.14 | OrthoFinder output from all 47 species | |
| LOC_Os08g35420.1 | PSBA, LOC_Os08g35420 | component PsbA/D1 of PS-II reaction center complex | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os10g21192.1 | PSBA, LOC_Os10g21192 | component PsbA/D1 of PS-II reaction center complex | 0.14 | OrthoFinder output from all 47 species | |
| LOC_Os10g39880.1 | PSBA, LOC_Os10g39880 | Photosystem II protein D1 OS=Oryza sativa subsp. indica... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os12g19580.1 | PSBA, LOC_Os12g19580 | Photosystem II protein D1 OS=Oryza sativa subsp. indica... | 0.14 | OrthoFinder output from all 47 species | |
| Len_g50353 | PSBD | component *(PsbD/D2) of PS-II reaction center complex &... | 0.05 | OrthoFinder output from all 47 species | |
| Lfl_g02222 | PSBA | component *(PsbA/D1) of PS-II reaction center complex &... | 0.05 | OrthoFinder output from all 47 species | |
| Mp1g09910.1 | No alias | Photosystem II protein D1 OS=Chlorella ellipsoidea... | 0.07 | OrthoFinder output from all 47 species | |
| Mp3g12650.1 | No alias | Photosystem II protein D1 OS=Marchantia polymorpha... | 0.07 | OrthoFinder output from all 47 species | |
| Msp_g06249 | PSBA | component *(PsbA/D1) of PS-II reaction center complex &... | 0.03 | OrthoFinder output from all 47 species | |
| Nbi_g06167 | PSBA | component *(PsbA/D1) of PS-II reaction center complex &... | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g00373 | PSBA | component *(PsbA/D1) of PS-II reaction center complex &... | 0.12 | OrthoFinder output from all 47 species | |
| Ore_g12399 | PSBD | component *(PsbD/D2) of PS-II reaction center complex &... | 0.13 | OrthoFinder output from all 47 species | |
| Pnu_g00529 | PSBA | component *(PsbA/D1) of PS-II reaction center complex &... | 0.05 | OrthoFinder output from all 47 species | |
| Pnu_g14362 | PSBD | component *(PsbD/D2) of PS-II reaction center complex &... | 0.04 | OrthoFinder output from all 47 species | |
| Ppi_g01211 | PSBD | component *(PsbD/D2) of PS-II reaction center complex &... | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g01382 | No alias | component *(PsbD/D2) of PS-II reaction center complex &... | 0.04 | OrthoFinder output from all 47 species | |
| Sam_g05154 | No alias | component *(PsbA/D1) of PS-II reaction center complex &... | 0.06 | OrthoFinder output from all 47 species | |
| Smo137879 | PSBD | Photosynthesis.photophosphorylation.photosystem II.PS-II... | 0.07 | OrthoFinder output from all 47 species | |
| Smo139195 | PSBA | Photosystem II protein D1 OS=Phalaenopsis aphrodite... | 0.06 | OrthoFinder output from all 47 species | |
| Smo236852 | PSBA | Photosynthesis.photophosphorylation.photosystem II.PS-II... | 0.07 | OrthoFinder output from all 47 species | |
| Solyc00g230080.1.1 | PSBD, Solyc00g230080 | Photosystem II D2 protein OS=Tupiella akineta... | 0.04 | OrthoFinder output from all 47 species | |
| Solyc00g500130.1.1 | PSBA, Solyc00g500130 | component PsbA/D1 of PS-II reaction center complex | 0.13 | OrthoFinder output from all 47 species | |
| Solyc00g500200.1.1 | PSBA, Solyc00g500200 | component PsbA/D1 of PS-II reaction center complex | 0.13 | OrthoFinder output from all 47 species | |
| Solyc00g500296.1.1 | PSBA, Solyc00g500296 | component PsbA/D1 of PS-II reaction center complex | 0.13 | OrthoFinder output from all 47 species | |
| Solyc00g500329.1.1 | PSBA, Solyc00g500329 | component PsbA/D1 of PS-II reaction center complex | 0.13 | OrthoFinder output from all 47 species | |
| Solyc01g097530.3.1 | PSBA, Solyc01g097530 | Photosystem II protein D1 OS=Cuscuta obtusiflora... | 0.03 | OrthoFinder output from all 47 species | |
| Solyc02g011990.1.1 | PSBA, Solyc02g011990 | Photosystem II protein D1 OS=Marchantia polymorpha... | 0.03 | OrthoFinder output from all 47 species | |
| Solyc02g021290.1.1 | PSBA, Solyc02g021290 | Photosystem II protein D1 OS=Chlorella ellipsoidea... | 0.05 | OrthoFinder output from all 47 species | |
| Solyc11g030830.1.1 | PSBA, Solyc11g030830 | no hits & (original description: none) | 0.02 | OrthoFinder output from all 47 species | |
| Solyc12g039030.1.1 | PSBA, Solyc12g039030 | Photosystem II protein D1 OS=Oltmannsiellopsis viridis... | 0.05 | OrthoFinder output from all 47 species | |
| Tin_g01230 | PSBD | component *(PsbD/D2) of PS-II reaction center complex &... | 0.02 | OrthoFinder output from all 47 species | |
| Tin_g12149 | PSBA | component *(PsbA/D1) of PS-II reaction center complex &... | 0.07 | OrthoFinder output from all 47 species | |
| Zm00001e015953_P001 | PSBD, Zm00001e015953 | component PsbD/D2 of PS-II reaction center complex | 0.05 | OrthoFinder output from all 47 species | |
| Zm00001e036844_P001 | PSBA, Zm00001e036844 | Photosystem II protein D1 OS=Zea mays... | 0.04 | OrthoFinder output from all 47 species | |
| Zm00001e042043_P001 | PSBD, Zm00001e042043 | Photosystem II D2 protein OS=Angiopteris evecta... | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e042109_P001 | PSBD, Zm00001e042109 | Photosystem II D2 protein OS=Angiopteris evecta... | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e042113_P001 | PSBA, Zm00001e042113 | Photosystem II protein D1 OS=Zea mays... | 0.05 | OrthoFinder output from all 47 species | |
| Zm00001e042158_P001 | PSBD, Zm00001e042158 | Photosystem II D2 protein OS=Angiopteris evecta... | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e042173_P001 | PSBD, Zm00001e042173 | Photosystem II D2 protein OS=Angiopteris evecta... | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e042176_P001 | PSBA, Zm00001e042176 | component PsbA/D1 of PS-II reaction center complex | 0.05 | OrthoFinder output from all 47 species | |
| Zm00001e042427_P001 | PSBD, Zm00001e042427 | component PsbD/D2 of PS-II reaction center complex | 0.05 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003677 | DNA binding | IEP | HCCA |
| MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | HCCA |
| MF | GO:0005507 | copper ion binding | IEP | HCCA |
| CC | GO:0005575 | cellular_component | IEP | HCCA |
| BP | GO:0006091 | generation of precursor metabolites and energy | IEP | HCCA |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0006351 | DNA-templated transcription | IEP | HCCA |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
| MF | GO:0008131 | primary amine oxidase activity | IEP | HCCA |
| BP | GO:0008150 | biological_process | IEP | HCCA |
| BP | GO:0008152 | metabolic process | IEP | HCCA |
| BP | GO:0009058 | biosynthetic process | IEP | HCCA |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | HCCA |
| BP | GO:0009308 | amine metabolic process | IEP | HCCA |
| CC | GO:0009521 | photosystem | IEP | HCCA |
| CC | GO:0009579 | thylakoid | IEP | HCCA |
| BP | GO:0009767 | photosynthetic electron transport chain | IEP | HCCA |
| BP | GO:0009987 | cellular process | IEP | HCCA |
| BP | GO:0015979 | photosynthesis | IEP | HCCA |
| CC | GO:0016020 | membrane | IEP | HCCA |
| BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
| MF | GO:0016168 | chlorophyll binding | IEP | HCCA |
| MF | GO:0016638 | oxidoreductase activity, acting on the CH-NH2 group of donors | IEP | HCCA |
| MF | GO:0016641 | oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor | IEP | HCCA |
| MF | GO:0016779 | nucleotidyltransferase activity | IEP | HCCA |
| BP | GO:0018130 | heterocycle biosynthetic process | IEP | HCCA |
| BP | GO:0019438 | aromatic compound biosynthetic process | IEP | HCCA |
| BP | GO:0019684 | photosynthesis, light reaction | IEP | HCCA |
| BP | GO:0022900 | electron transport chain | IEP | HCCA |
| BP | GO:0032774 | RNA biosynthetic process | IEP | HCCA |
| CC | GO:0032991 | protein-containing complex | IEP | HCCA |
| MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | HCCA |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0034654 | nucleobase-containing compound biosynthetic process | IEP | HCCA |
| BP | GO:0044237 | cellular metabolic process | IEP | HCCA |
| BP | GO:0044249 | cellular biosynthetic process | IEP | HCCA |
| BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | HCCA |
| BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
| MF | GO:0046906 | tetrapyrrole binding | IEP | HCCA |
| MF | GO:0048038 | quinone binding | IEP | HCCA |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| BP | GO:0097659 | nucleic acid-templated transcription | IEP | HCCA |
| MF | GO:0097747 | RNA polymerase activity | IEP | HCCA |
| CC | GO:0098796 | membrane protein complex | IEP | HCCA |
| CC | GO:0110165 | cellular anatomical entity | IEP | HCCA |
| MF | GO:0140098 | catalytic activity, acting on RNA | IEP | HCCA |
| MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
| BP | GO:1901362 | organic cyclic compound biosynthetic process | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
| BP | GO:1901576 | organic substance biosynthetic process | IEP | HCCA |
No InterPro domains available for this sequence
| No external refs found! |