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  5. Sacu_v1.1_s0002.g001069

Sacu_v1.1_s0002.g001069


Description : regulatory GTPase (NUG2) of LSU processome & original description: CDS=74-2764


Gene families : OG0005924 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005924_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0002.g001069

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00265680 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 OrthoFinder output from all 47 species
AT1G52980 No alias GTP-binding family protein 0.03 OrthoFinder output from all 47 species
Als_g08227 No alias regulatory GTPase (NUG2) of LSU processome & original... 0.02 OrthoFinder output from all 47 species
Gb_01485 No alias NUG2 LSU processome regulatory GTPase 0.04 OrthoFinder output from all 47 species
Solyc07g063270.3.1 Solyc07g063270 NUG2 LSU processome regulatory GTPase 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0005525 GTP binding IEA Interproscan
BP GO:0006352 DNA-templated transcription initiation IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005643 nuclear pore IEP HCCA
MF GO:0010181 FMN binding IEP HCCA
MF GO:0015299 obsolete solute:proton antiporter activity IEP HCCA
MF GO:0016782 transferase activity, transferring sulphur-containing groups IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
MF GO:0035596 methylthiotransferase activity IEP HCCA
MF GO:0050497 alkylthioltransferase activity IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
InterPro domains Description Start Stop
IPR000814 TBP 721 800
IPR000814 TBP 808 890
IPR012971 NOG2_N_dom 43 169
IPR006073 GTP-bd 309 379
No external refs found!