Solyc09g059580.2.1 (Solyc09g059580.2)


Aliases : Solyc09g059580.2

Description : 35.1.5 not assigned.no ontology.pentatricopeptide (PPR) repeat-containing protein Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0000001 (Gene family) Phylogenetic Tree(s): OG0000001_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Solyc09g059580.2.1
Cluster HCCA cluster: Cluster_288

Target Alias Description ECC score Gene Family Method Actions
AT1G06140 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.07 Gene family
AT1G17630 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.05 Gene family
AT1G20230 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.06 Gene family
AT1G56570 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.08 Gene family
AT1G69350 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.06 Gene family
AT2G27610 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.12 Gene family
AT2G39620 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.09 Gene family
AT3G01580 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.08 Gene family
AT3G03580 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Gene family
AT3G05240 MEF19 mitochondrial editing factor 19 0.03 Gene family
AT3G08820 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.07 Gene family
AT3G13880 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Gene family
AT3G15930 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.06 Gene family
AT3G25060 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Gene family
AT3G26782 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.07 Gene family
AT3G49142 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Gene family
AT3G53360 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Gene family
AT4G14170 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.07 Gene family
AT4G15720 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Gene family
AT4G21065 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Gene family
AT4G35130 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.08 Gene family
AT4G39530 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Gene family
AT4G39952 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.07 Gene family
AT5G08490 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.06 Gene family
AT5G27110 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.06 Gene family
AT5G52850 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.07 Gene family
GSVIVT01000086001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
GSVIVT01000420001 No alias No description available 0.08 Gene family
GSVIVT01000968001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
GSVIVT01003422001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.05 Gene family
GSVIVT01010654001 No alias No description available 0.08 Gene family
GSVIVT01012159001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
GSVIVT01015325001 No alias No description available 0.06 Gene family
GSVIVT01017763001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.07 Gene family
GSVIVT01018597001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
GSVIVT01019408001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
GSVIVT01024870001 No alias No description available 0.03 Gene family
GSVIVT01026025001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
GSVIVT01027504001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
GSVIVT01028022001 No alias No description available 0.04 Gene family
GSVIVT01028819001 No alias No description available 0.03 Gene family
GSVIVT01030054001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.07 Gene family
GSVIVT01031265001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.06 Gene family
GSVIVT01032394001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
GSVIVT01033004001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
GSVIVT01033304001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.05 Gene family
GSVIVT01033837001 No alias No description available 0.03 Gene family
GSVIVT01035837001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
GSVIVT01036511001 No alias No description available 0.03 Gene family
GSVIVT01036943001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.05 Gene family
LOC_Os01g01115 Os01g0101150 No description available 0.03 Gene family
LOC_Os01g15530 Os01g0260000 No description available 0.03 Gene family
LOC_Os01g19380 Os01g0299150,... 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
LOC_Os02g44480 Os02g0663900 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.05 Gene family
LOC_Os03g08680 Os03g0185200 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
LOC_Os03g11700 Os03g0216400 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
LOC_Os03g16450 Os03g0271300 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
LOC_Os03g60690 Os03g0821700 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
LOC_Os04g35650 Os04g0436800 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
LOC_Os04g43430 Os04g0514500 No description available 0.06 Gene family
LOC_Os05g05490 Os05g0147600 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
LOC_Os05g30710 Os05g0370000 No description available 0.03 Gene family
LOC_Os06g02200 Os06g0112000 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.06 Gene family
LOC_Os07g05560 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.1 Gene family
LOC_Os08g25280 Os08g0340900 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
LOC_Os08g38610 Os08g0494200,... No description available 0.05 Gene family
LOC_Os10g34720 Os10g0488900 No description available 0.05 Gene family
LOC_Os11g01836 Os11g0109600 No description available 0.03 Gene family
LOC_Os11g45410 Os11g0679900,... 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
LOC_Os12g01850 Os12g0109300 No description available 0.06 Gene family
LOC_Os12g30620 Os12g0490100 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
MA_10164206g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
MA_10429540g0020 No alias No description available 0.04 Gene family
MA_10432670g0020 No alias No description available 0.05 Gene family
MA_116829g0010 No alias No description available 0.03 Gene family
MA_122899g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
MA_177435g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
MA_20599g0020 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
MA_20899g0020 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.06 Gene family
MA_210823g0010 No alias No description available 0.03 Gene family
MA_31170g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
MA_3317g0020 No alias No description available 0.02 Gene family
MA_34492g0020 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.05 Gene family
MA_3449g0010 No alias No description available 0.03 Gene family
MA_36655g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
MA_483636g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
MA_59148g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
MA_61422g0020 No alias No description available 0.02 Gene family
MA_65500g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
MA_83898g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
MA_9258g0010 No alias No description available 0.03 Gene family
MA_97789g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Smo101 PACid_15417675 No description available 0.02 Gene family
Smo399 PACid_15419376 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
Solyc09g007040.1.1 Solyc09g007040.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
Solyc09g010070.1.1 Solyc09g010070.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Solyc12g096510.2.1 Solyc12g096510.2 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.05 Gene family
Zm00001d005149 GRMZM2G138303 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Zm00001d012961 GRMZM2G144071 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Zm00001d013941 GRMZM2G073017 No description available 0.07 Gene family
Zm00001d016473 GRMZM2G328961 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Zm00001d017518 GRMZM2G014977 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Zm00001d025463 GRMZM2G341216 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.05 Gene family
Zm00001d025656 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Zm00001d028388 No alias 35.1.27 not assigned.no ontology.tetratricopeptide... 0.05 Gene family
Zm00001d028422 GRMZM2G019689 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
Zm00001d028587 GRMZM5G836424 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
Zm00001d030143 GRMZM2G430710 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Zm00001d033495 GRMZM5G849971 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.08 Gene family
Zm00001d036833 GRMZM5G811022 No description available 0.03 Gene family
Zm00001d037891 No alias No description available 0.02 Gene family
Zm00001d039449 No alias No description available 0.03 Gene family
Zm00001d042039 GRMZM2G060536 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.07 Gene family
Zm00001d042067 GRMZM2G099875 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Zm00001d043068 GRMZM2G399433 No description available 0.04 Gene family
Zm00001d043081 GRMZM2G350410 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.11 Gene family
Zm00001d043107 GRMZM2G456114 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.11 Gene family
Zm00001d050938 GRMZM2G163396 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Zm00001d051576 GRMZM2G110483 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.1 Gene family
Zm00001d051816 GRMZM2G029859 No description available 0.05 Gene family
Zm00001d052794 GRMZM2G140600 No description available 0.04 Gene family

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR032867 DYW_dom 541 665
IPR002885 Pentatricopeptide_repeat 368 415
IPR002885 Pentatricopeptide_repeat 68 113
IPR002885 Pentatricopeptide_repeat 271 301
IPR002885 Pentatricopeptide_repeat 142 168
IPR002885 Pentatricopeptide_repeat 170 199
IPR002885 Pentatricopeptide_repeat 43 62
IPR002885 Pentatricopeptide_repeat 243 266
No external refs found!