Sacu_v1.1_s0001.g000628 (ATNTH1)

Aliases : ATNTH1

Description : bifunctional glycosylase-lyase and endonuclease *(NTH) & original description: CDS=103-1158

Gene families : OG0003391 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003391_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sacu_v1.1_s0001.g000628

Target	Alias	Description	ECC score	Gene Family Method
Azfi_s0006.g010504	ATNTH1	bifunctional glycosylase-lyase and endonuclease *(NTH) &...	0.01	OrthoFinder output from all 47 species
Cba_g53311	ATNTH1	bifunctional glycosylase-lyase and endonuclease *(NTH) &...	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000378.10	No alias	No description available	0.02	OrthoFinder output from all 47 species
Pir_g51966	ATNTH1	bifunctional glycosylase-lyase and endonuclease *(NTH) &...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	None	Extended
BP	GO:0006284	base-excision repair	IEA	Interproscan
BP	GO:0006325	chromatin organization	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0009982	pseudouridine synthase activity	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
MF	GO:0016866	intramolecular transferase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR006818	ASF1-like	2	52
IPR000445	HhH_motif	221	248
IPR003265	HhH-GPD_domain	154	293

External Links

No external refs found!

Sacu_v1.1_s0001.g000628 (ATNTH1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation