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  5. Sacu_v1.1_s0001.g000532

Sacu_v1.1_s0001.g000532 (ATEXPA4, ATEXP4,...)


Aliases : ATEXPA4, ATEXP4, EXPA4, ATHEXP ALPHA 1.6

Description : alpha-class expansin & original description: CDS=37-810


Gene families : OG0000032 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0001.g000532

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00077p00060330 EXPA8, ATHEXP... Cell wall.cell wall proteins.expansins.alpha-type expansin 0.02 OrthoFinder output from all 47 species
Aev_g18902 EXPA16, ATHEXP... alpha-class expansin & original description: none 0.02 OrthoFinder output from all 47 species
Als_g02221 EXP15, ATEXPA15,... alpha-class expansin & original description: none 0.03 OrthoFinder output from all 47 species
Als_g08029 EXP15, ATEXPA15,... alpha-class expansin & original description: none 0.02 OrthoFinder output from all 47 species
Als_g51474 ATEXPA10,... alpha-class expansin & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g12260 EXP15, ATEXPA15,... alpha-class expansin & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g13184 EXP15, ATEXPA15,... alpha-class expansin & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g30155 EXP15, ATEXPA15,... alpha-class expansin & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene39739.t1 EXP15, ATEXPA15,... alpha-class expansin & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene42894.t1 ATEXPA10,... alpha-class expansin & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene52606.t1 EXPB3, ATEXPB3,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0117.g046537 EXP15, ATEXPA15,... alpha-class expansin & original description: CDS=74-868 0.03 OrthoFinder output from all 47 species
Cba_g10144 EXPA2, ATHEXP... alpha-class expansin & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g10427 ATEXPA10,... alpha-class expansin & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.17G039600.1 EXP15, ATEXPA15,... alpha-class expansin & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.29G046400.1 EXPA16, ATHEXP... alpha-class expansin & original description:... 0.03 OrthoFinder output from all 47 species
Dac_g10261 ATEXPA10,... alpha-class expansin & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g43609 ATEXPA10,... alpha-class expansin & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01016525001 ATEXPA4, ATEXP4,... Cell wall.cell wall proteins.expansins.alpha-type expansin 0.02 OrthoFinder output from all 47 species
Gb_01504 EXPA8, ATHEXP... alpha-class expansin 0.02 OrthoFinder output from all 47 species
Gb_07437 No alias alpha-class expansin 0.02 OrthoFinder output from all 47 species
Gb_07438 No alias alpha-class expansin 0.02 OrthoFinder output from all 47 species
LOC_Os02g51040.1 ATEXPA10,... alpha-class expansin 0.04 OrthoFinder output from all 47 species
LOC_Os05g19570.1 LOC_Os05g19570 alpha-class expansin 0.02 OrthoFinder output from all 47 species
LOC_Os06g50400.1 ATEXPA11, ATHEXP... alpha-class expansin 0.02 OrthoFinder output from all 47 species
LOC_Os10g40710.1 ATHEXP BETA 1.4,... Expansin-B2 OS=Oryza sativa subsp. japonica... 0.02 OrthoFinder output from all 47 species
Lfl_g25335 ATEXPA10,... alpha-class expansin & original description: none 0.03 OrthoFinder output from all 47 species
MA_86877g0010 ATEXPA10,... alpha-class expansin 0.02 OrthoFinder output from all 47 species
Mp1g22700.1 EXP15, ATEXPA15,... alpha-class expansin 0.02 OrthoFinder output from all 47 species
Pp3c7_12810V3.1 ATEXPA4, ATEXP4,... expansin A14 0.01 OrthoFinder output from all 47 species
Ppi_g06771 ATEXPA10,... alpha-class expansin & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g08538 ATEXPA10,... alpha-class expansin & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g10345 ATEXPA10,... alpha-class expansin & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g61503 EXPB3, ATEXPB3,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc06g005560.4.1 ATEXPA4, ATEXP4,... alpha-class expansin 0.03 OrthoFinder output from all 47 species
Spa_g11698 ATEXPA10,... alpha-class expansin & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g48547 ATEXPA10,... alpha-class expansin & original description: none 0.01 OrthoFinder output from all 47 species
Spa_g54039 ATEXPA1, EXP1,... alpha-class expansin & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e013311_P001 ATEXLA1, EXPL1,... Expansin-like A4 OS=Oryza sativa subsp. japonica... 0.02 OrthoFinder output from all 47 species
Zm00001e037578_P001 ATEXPA20,... alpha-class expansin 0.02 OrthoFinder output from all 47 species
Zm00001e038931_P002 ATEXPL2, EXPL2,... alpha-like-class expansin 0.02 OrthoFinder output from all 47 species
Zm00001e040578_P001 ATEXPA11, ATHEXP... alpha-class expansin 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0008037 cell recognition IEP HCCA
CC GO:0009507 chloroplast IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009536 plastid IEP HCCA
BP GO:0009605 response to external stimulus IEP HCCA
BP GO:0009606 tropism IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0010274 hydrotropism IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0048544 recognition of pollen IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR007117 Expansin_CBD 163 240
IPR009009 RlpA-like_DPBB 65 152
No external refs found!