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  5. Sacu_v1.1_s0001.g000263

Sacu_v1.1_s0001.g000263 (RABF2B, ATRAB-F2B,...)


Aliases : RABF2B, ATRAB-F2B, RAB-F2B, ATRABF2B, ARA7, ARA-7, ATRAB5B

Description : vesicle tethering small GTPase *(RAB5) & original description: CDS=135-737


Gene families : OG0001928 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001928_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0001.g000263

Target Alias Description ECC score Gene Family Method Actions
AT5G45130 RAB5A, RHA1,... RAB homolog 1 0.02 OrthoFinder output from all 47 species
Adi_g082867 RABF2B,... vesicle tethering small GTPase *(RAB5) & original... 0.02 OrthoFinder output from all 47 species
Cba_g27617 RABF2B,... vesicle tethering small GTPase *(RAB5) & original... 0.03 OrthoFinder output from all 47 species
Ehy_g26270 RABF2B,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g13598 RABF2B,... vesicle tethering small GTPase *(RAB5) & original... 0.03 OrthoFinder output from all 47 species
Lfl_g00630 RABF2B,... vesicle tethering small GTPase *(RAB5) & original... 0.03 OrthoFinder output from all 47 species
Nbi_g06553 RABF2B,... vesicle tethering small GTPase *(RAB5) & original... 0.02 OrthoFinder output from all 47 species
Ore_g06188 RABF2B,... vesicle tethering small GTPase *(RAB5) & original... 0.03 OrthoFinder output from all 47 species
Pir_g02423 RABF2B,... vesicle tethering small GTPase *(RAB5) & original... 0.03 OrthoFinder output from all 47 species
Sam_g13038 No alias vesicle tethering small GTPase *(RAB5) & original... 0.03 OrthoFinder output from all 47 species
Zm00001e006467_P001 RABF2B,... F-class RAB GTPase 0.03 OrthoFinder output from all 47 species
Zm00001e012317_P001 RABF2B,... F-class RAB GTPase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000062 fatty-acyl-CoA binding IEP HCCA
CC GO:0000145 exocyst IEP HCCA
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
BP GO:0006887 exocytosis IEP HCCA
BP GO:0008654 phospholipid biosynthetic process IEP HCCA
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
BP GO:0032940 secretion by cell IEP HCCA
MF GO:0033218 amide binding IEP HCCA
BP GO:0046903 secretion IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
MF GO:0120227 acyl-CoA binding IEP HCCA
BP GO:0140352 export from cell IEP HCCA
MF GO:1901567 fatty acid derivative binding IEP HCCA
MF GO:1901681 sulfur compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001806 Small_GTPase 12 171
No external refs found!