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  5. Sacu_v1.1_s0001.g000146

Sacu_v1.1_s0001.g000146


Description : not classified & original description: CDS=228-1322


Gene families : OG0000101 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000101_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0001.g000146

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00024p00170820 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
Adi_g018009 ATCRT1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g020451 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g14925 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g46210 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene33056.t1 Aspi01Gene33056 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dcu_g05540 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.01 OrthoFinder output from all 47 species
Dde_g26594 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Dde_g51480 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g05901 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g11152 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
GSVIVT01015309001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
Gb_29787 No alias E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum... 0.02 OrthoFinder output from all 47 species
LOC_Os03g59760.1 ATCRT1, LOC_Os03g59760 E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp.... 0.02 OrthoFinder output from all 47 species
Lfl_g11310 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g28304 RHC1A RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.01 OrthoFinder output from all 47 species
Mp7g15970.1 No alias E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Msp_g10979 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Nbi_g10475 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g13707 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g03817 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Ore_g04701 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g27550 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Pir_g61153 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g55440 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g56162 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g17099 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc12g008440.1.1 Solyc12g008440 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Zm00001e004520_P001 Zm00001e004520 E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0061630 ubiquitin protein ligase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005215 transporter activity IEP HCCA
MF GO:0005384 manganese ion transmembrane transporter activity IEP HCCA
CC GO:0005789 endoplasmic reticulum membrane IEP HCCA
BP GO:0005984 disaccharide metabolic process IEP HCCA
BP GO:0005991 trehalose metabolic process IEP HCCA
BP GO:0005992 trehalose biosynthetic process IEP HCCA
BP GO:0006066 alcohol metabolic process IEP HCCA
BP GO:0006720 isoprenoid metabolic process IEP HCCA
BP GO:0006811 monoatomic ion transport IEP HCCA
BP GO:0006812 monoatomic cation transport IEP HCCA
BP GO:0006813 potassium ion transport IEP HCCA
BP GO:0006873 cellular monoatomic ion homeostasis IEP HCCA
BP GO:0006875 cellular metal ion homeostasis IEP HCCA
MF GO:0008324 monoatomic cation transmembrane transporter activity IEP HCCA
BP GO:0009311 oligosaccharide metabolic process IEP HCCA
BP GO:0009312 oligosaccharide biosynthetic process IEP HCCA
MF GO:0009916 alternative oxidase activity IEP HCCA
MF GO:0015075 monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0015079 potassium ion transmembrane transporter activity IEP HCCA
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP HCCA
BP GO:0016093 polyprenol metabolic process IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors IEP HCCA
MF GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor IEP HCCA
BP GO:0019348 dolichol metabolic process IEP HCCA
BP GO:0019725 cellular homeostasis IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
MF GO:0022890 inorganic cation transmembrane transporter activity IEP HCCA
BP GO:0030003 cellular monoatomic cation homeostasis IEP HCCA
BP GO:0030026 cellular manganese ion homeostasis IEP HCCA
BP GO:0042592 homeostatic process IEP HCCA
BP GO:0046351 disaccharide biosynthetic process IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
MF GO:0046915 transition metal ion transmembrane transporter activity IEP HCCA
BP GO:0046916 cellular transition metal ion homeostasis IEP HCCA
BP GO:0048878 chemical homeostasis IEP HCCA
BP GO:0050801 monoatomic ion homeostasis IEP HCCA
BP GO:0055065 metal ion homeostasis IEP HCCA
BP GO:0055071 manganese ion homeostasis IEP HCCA
BP GO:0055076 transition metal ion homeostasis IEP HCCA
BP GO:0055080 monoatomic cation homeostasis IEP HCCA
BP GO:0055082 cellular chemical homeostasis IEP HCCA
BP GO:0071805 potassium ion transmembrane transport IEP HCCA
BP GO:0098771 inorganic ion homeostasis IEP HCCA
BP GO:1901615 organic hydroxy compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR039525 RNF126-like_zinc-ribbon 30 60
No external refs found!