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  5. Sacu_v1.1_s0001.g000038

Sacu_v1.1_s0001.g000038


Description : RING-H2-class ATL-subclass E3 ubiquitin ligase & original description: CDS=1-654


Gene families : OG0000008 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0001.g000038

Target Alias Description ECC score Gene Family Method Actions
AT1G49210 No alias RING/U-box superfamily protein 0.02 OrthoFinder output from all 47 species
AT2G34000 No alias RING/U-box superfamily protein 0.04 OrthoFinder output from all 47 species
Adi_g008877 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Adi_g048849 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Als_g52149 ATL5 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene12542.t1 Aspi01Gene12542 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Ceric.13G013700.1 RHA3A, Ceric.13G013700 not classified & original description: pacid=50636450... 0.01 OrthoFinder output from all 47 species
Dde_g19799 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g06581 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Ehy_g28199 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
LOC_Os02g36300.1 ATL31, CNI1,... RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
LOC_Os05g45060.1 LOC_Os05g45060 RING-H2 finger protein ATL68 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Lfl_g29042 XERICO not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_10435495g0010 No alias RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
MA_129478g0010 BRH1 no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
MA_159453g0010 No alias RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
Pir_g07714 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Pir_g66716 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Pp3c23_1651V3.1 Pp3c23_1651 RING/U-box superfamily protein 0.01 OrthoFinder output from all 47 species
Smo96681 No alias Protein degradation.peptide tagging.Ubiquitin... 0.01 OrthoFinder output from all 47 species
Solyc04g082690.1.1 Solyc04g082690 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
Solyc06g053640.1.1 Solyc06g053640 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
Solyc06g061250.3.1 Solyc06g061250 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
Solyc07g006360.1.1 Solyc07g006360 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
Solyc09g075320.1.1 ATL2, TL2, Solyc09g075320 RING-H2-class E3 ligase 0.01 OrthoFinder output from all 47 species
Solyc11g066510.3.1 Solyc11g066510 RING-H2-class E3 ligase 0.01 OrthoFinder output from all 47 species
Spa_g02168 ATL2, TL2 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Spa_g08408 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.01 OrthoFinder output from all 47 species
Spa_g29342 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g03901 ATL2, TL2 RING-H2-class ATL-subclass E3 ubiquiTin ligase &... 0.01 OrthoFinder output from all 47 species
Zm00001e015905_P001 ATL31, CNI1,... RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
Zm00001e029032_P001 Zm00001e029032 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
Zm00001e032186_P001 RHA3B, Zm00001e032186 no hits & (original description: none) 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000120 RNA polymerase I transcription regulator complex IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
BP GO:0006360 transcription by RNA polymerase I IEP HCCA
BP GO:0006811 monoatomic ion transport IEP HCCA
MF GO:0015075 monoatomic ion transmembrane transporter activity IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 102 146
No external refs found!