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  5. Sacu_v1.1_s0001.g000008

Sacu_v1.1_s0001.g000008


Description : RING-H2-class ATL-subclass E3 ubiquitin ligase & original description: CDS=1-684


Gene families : OG0000008 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0001.g000008
Cluster HCCA: Cluster_55

Target Alias Description ECC score Gene Family Method Actions
AT2G37580 No alias RING/U-box superfamily protein 0.03 OrthoFinder output from all 47 species
Msp_g12835 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Msp_g31921 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e023260_P001 Zm00001e023260 RING-H2-class E3 ligase 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004659 prenyltransferase activity IEP HCCA
MF GO:0008318 protein prenyltransferase activity IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
BP GO:0018342 protein prenylation IEP HCCA
CC GO:0035145 exon-exon junction complex IEP HCCA
BP GO:0097354 prenylation IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 90 133
No external refs found!