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  5. Sacu_v1.1_s0001.g000001

Sacu_v1.1_s0001.g000001 (PUM7, APUM7)


Aliases : PUM7, APUM7

Description : not classified & original description: CDS=1-2403


Gene families : OG0000858 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000858_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0001.g000001

Target Alias Description ECC score Gene Family Method Actions
Adi_g001627 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g50820 APUM12, PUM12 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0040.g026500 APUM12, PUM12 not classified & original description: CDS=1-2874 0.02 OrthoFinder output from all 47 species
Azfi_s0255.g060478 PUM7, APUM7 not classified & original description: CDS=1-1518 0.04 OrthoFinder output from all 47 species
Cre12.g544700 PUM7, APUM7 Pumilio homolog 12 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Pnu_g00833 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g63452 PUM7, APUM7 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0068.g016386 APUM8, PUM8 not classified & original description: CDS=1-2142 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0190.g025276 APUM12, PUM12 not classified & original description: CDS=601-3087 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001313 Pumilio_RNA-bd_rpt 598 628
IPR001313 Pumilio_RNA-bd_rpt 671 688
IPR001313 Pumilio_RNA-bd_rpt 633 666
IPR001313 Pumilio_RNA-bd_rpt 486 520
IPR001313 Pumilio_RNA-bd_rpt 745 762
IPR001313 Pumilio_RNA-bd_rpt 708 739
IPR001313 Pumilio_RNA-bd_rpt 522 555
IPR001313 Pumilio_RNA-bd_rpt 562 591
No external refs found!