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  5. Ehy_g05588

Ehy_g05588 (COL2, ATCOL2)


Aliases : COL2, ATCOL2

Description : not classified & original description: none


Gene families : OG0001141 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001141_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ehy_g05588

Target Alias Description ECC score Gene Family Method Actions
AT2G24790 COL3, ATCOL3 CONSTANS-like 3 0.04 OrthoFinder output from all 47 species
AT3G02380 COL2, ATCOL2 CONSTANS-like 2 0.03 OrthoFinder output from all 47 species
LOC_Os02g39710.1 ATCOL5, COL5,... transcription factor (BBX-CO) 0.04 OrthoFinder output from all 47 species
LOC_Os06g16370.1 COL2, ATCOL2,... transcription factor (BBX-CO) 0.02 OrthoFinder output from all 47 species
Lfl_g08431 COL2, ATCOL2 floral promoter *(CONSTANS) & original description: none 0.03 OrthoFinder output from all 47 species
Mp8g13470.1 ATCOL4, COL4 transcription factor (BBX-CO) 0.03 OrthoFinder output from all 47 species
Solyc02g089500.4.1 COL1, ATCOL1,... transcription factor (BBX-CO) 0.02 OrthoFinder output from all 47 species
Solyc02g089520.2.1 COL2, ATCOL2,... transcription factor (BBX-CO) 0.02 OrthoFinder output from all 47 species
Spa_g06395 ATCOL4, COL4 floral promoter *(CONSTANS) & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g27278 COL1, ATCOL1 floral promoter *(CONSTANS) & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0015299 obsolete solute:proton antiporter activity IEP HCCA
InterPro domains Description Start Stop
IPR010402 CCT_domain 261 303
IPR000315 Znf_B-box 3 48
No external refs found!