Azfi_s1775.g106727 (SVR1)


Aliases : SVR1

Description : plastidial rRNA pseudouridine synthase *(SVR1) & original description: CDS=51-1217


Gene families : OG0003742 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003742_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s1775.g106727
Cluster HCCA: Cluster_82

Target Alias Description ECC score Gene Family Method Actions
AT2G39140 SVR1 pseudouridine synthase family protein 0.03 OrthoFinder output from all 47 species
Azfi_s0293.g063450 SVR1 plastidial rRNA pseudouridine synthase *(SVR1) &... 0.19 OrthoFinder output from all 47 species
Gb_12891 SVR1 rRNA pseudouridine synthase (RsuA) 0.03 OrthoFinder output from all 47 species
LOC_Os03g05806.1 SVR1, LOC_Os03g05806 rRNA pseudouridine synthase (RsuA) 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0123.g021502 SVR1 plastidial rRNA pseudouridine synthase *(SVR1) &... 0.04 OrthoFinder output from all 47 species
Zm00001e000423_P001 SVR1, Zm00001e000423 rRNA pseudouridine synthase (RsuA) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
BP GO:0009451 RNA modification IEA Interproscan
MF GO:0009982 pseudouridine synthase activity IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0004797 thymidine kinase activity IEP HCCA
BP GO:0006302 double-strand break repair IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
MF GO:0019136 deoxynucleoside kinase activity IEP HCCA
MF GO:0019205 nucleobase-containing compound kinase activity IEP HCCA
MF GO:0019206 nucleoside kinase activity IEP HCCA
MF GO:0051920 peroxiredoxin activity IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR002942 S4_RNA-bd 129 171
IPR006145 PsdUridine_synth_RsuA/RluA 192 335
No external refs found!