Aliases : SVR1
Description : plastidial rRNA pseudouridine synthase *(SVR1) & original description: CDS=51-1217
Gene families : OG0003742 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003742_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Azfi_s1775.g106727 | |
Cluster | HCCA: Cluster_82 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AT2G39140 | SVR1 | pseudouridine synthase family protein | 0.03 | OrthoFinder output from all 47 species | |
Azfi_s0293.g063450 | SVR1 | plastidial rRNA pseudouridine synthase *(SVR1) &... | 0.19 | OrthoFinder output from all 47 species | |
Gb_12891 | SVR1 | rRNA pseudouridine synthase (RsuA) | 0.03 | OrthoFinder output from all 47 species | |
LOC_Os03g05806.1 | SVR1, LOC_Os03g05806 | rRNA pseudouridine synthase (RsuA) | 0.03 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0123.g021502 | SVR1 | plastidial rRNA pseudouridine synthase *(SVR1) &... | 0.04 | OrthoFinder output from all 47 species | |
Zm00001e000423_P001 | SVR1, Zm00001e000423 | rRNA pseudouridine synthase (RsuA) | 0.04 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0001522 | pseudouridine synthesis | IEA | Interproscan |
MF | GO:0003723 | RNA binding | IEA | Interproscan |
BP | GO:0009451 | RNA modification | IEA | Interproscan |
MF | GO:0009982 | pseudouridine synthase activity | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0004797 | thymidine kinase activity | IEP | HCCA |
BP | GO:0006302 | double-strand break repair | IEP | HCCA |
CC | GO:0009521 | photosystem | IEP | HCCA |
CC | GO:0009523 | photosystem II | IEP | HCCA |
CC | GO:0009654 | photosystem II oxygen evolving complex | IEP | HCCA |
BP | GO:0015979 | photosynthesis | IEP | HCCA |
MF | GO:0019136 | deoxynucleoside kinase activity | IEP | HCCA |
MF | GO:0019205 | nucleobase-containing compound kinase activity | IEP | HCCA |
MF | GO:0019206 | nucleoside kinase activity | IEP | HCCA |
MF | GO:0051920 | peroxiredoxin activity | IEP | HCCA |
CC | GO:1990204 | oxidoreductase complex | IEP | HCCA |
No external refs found! |