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  5. Azfi_s1721.g106130

Azfi_s1721.g106130


Description : plastidial splicing factor *(PDM3) & original description: CDS=1-1875


Gene families : OG0008153 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0008153_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s1721.g106130

Target Alias Description ECC score Gene Family Method Actions
Cba_g23160 No alias plastidial splicing factor *(PDM3) & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.01G002800.1 Ceric.01G002800 plastidial splicing factor *(PDM3) & original... 0.05 OrthoFinder output from all 47 species
LOC_Os01g61630.1 LOC_Os01g61630 Pentatricopeptide repeat-containing protein At5g39980,... 0.04 OrthoFinder output from all 47 species
Ore_g40651 No alias plastidial splicing factor *(PDM3) & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g58121 No alias plastidial splicing factor *(PDM3) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc02g087560.1.1 Solyc02g087560 Pentatricopeptide repeat-containing protein At5g39980,... 0.03 OrthoFinder output from all 47 species
Zm00001e019387_P001 Zm00001e019387 Pentatricopeptide repeat-containing protein At5g39980,... 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
MF GO:0030145 manganese ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 230 290
IPR002885 Pentatricopeptide_repeat 161 220
IPR002885 Pentatricopeptide_repeat 484 530
IPR002885 Pentatricopeptide_repeat 347 394
IPR002885 Pentatricopeptide_repeat 101 145
IPR002885 Pentatricopeptide_repeat 455 480
IPR002885 Pentatricopeptide_repeat 421 450
IPR002885 Pentatricopeptide_repeat 314 341
No external refs found!