Description : plastidial splicing factor *(PDM3) & original description: CDS=1-1875
Gene families : OG0008153 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0008153_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Cba_g23160 | No alias | plastidial splicing factor *(PDM3) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
Ceric.01G002800.1 | Ceric.01G002800 | plastidial splicing factor *(PDM3) & original... | 0.05 | OrthoFinder output from all 47 species | |
LOC_Os01g61630.1 | LOC_Os01g61630 | Pentatricopeptide repeat-containing protein At5g39980,... | 0.04 | OrthoFinder output from all 47 species | |
Ore_g40651 | No alias | plastidial splicing factor *(PDM3) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Ppi_g58121 | No alias | plastidial splicing factor *(PDM3) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Solyc02g087560.1.1 | Solyc02g087560 | Pentatricopeptide repeat-containing protein At5g39980,... | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e019387_P001 | Zm00001e019387 | Pentatricopeptide repeat-containing protein At5g39980,... | 0.06 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
CC | GO:0009521 | photosystem | IEP | HCCA |
CC | GO:0009523 | photosystem II | IEP | HCCA |
BP | GO:0015979 | photosynthesis | IEP | HCCA |
MF | GO:0030145 | manganese ion binding | IEP | HCCA |
MF | GO:0043169 | cation binding | IEP | HCCA |
MF | GO:0046872 | metal ion binding | IEP | HCCA |
MF | GO:0046914 | transition metal ion binding | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002885 | Pentatricopeptide_repeat | 230 | 290 |
IPR002885 | Pentatricopeptide_repeat | 161 | 220 |
IPR002885 | Pentatricopeptide_repeat | 484 | 530 |
IPR002885 | Pentatricopeptide_repeat | 347 | 394 |
IPR002885 | Pentatricopeptide_repeat | 101 | 145 |
IPR002885 | Pentatricopeptide_repeat | 455 | 480 |
IPR002885 | Pentatricopeptide_repeat | 421 | 450 |
IPR002885 | Pentatricopeptide_repeat | 314 | 341 |
No external refs found! |