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  5. Azfi_s1093.g097258

Azfi_s1093.g097258 (VAC1, ECB2, ATECB2)


Aliases : VAC1, ECB2, ATECB2

Description : not classified & original description: CDS=1-1314


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s1093.g097258

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00098p00167700 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g50390,... 0.03 OrthoFinder output from all 47 species
Ala_g25155 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Azfi_s0008.g011298 No alias not classified & original description: CDS=1-2325 0.03 OrthoFinder output from all 47 species
Azfi_s0011.g012554 No alias not classified & original description: CDS=1-2283 0.06 OrthoFinder output from all 47 species
Azfi_s0168.g054648 No alias not classified & original description: CDS=1-843 0.07 OrthoFinder output from all 47 species
Lfl_g06850 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
MA_23144g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.07 OrthoFinder output from all 47 species
MA_38266g0010 CRR22 RNA editing factor (MEF19). RNA editing factor (OTP82) 0.04 OrthoFinder output from all 47 species
Ppi_g14452 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0037.g011793 OTP84 not classified & original description: CDS=139-2724 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004146 dihydrofolate reductase activity IEP HCCA
BP GO:0006575 cellular modified amino acid metabolic process IEP HCCA
BP GO:0006760 folic acid-containing compound metabolic process IEP HCCA
BP GO:0009396 folic acid-containing compound biosynthetic process IEP HCCA
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP HCCA
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP HCCA
BP GO:0042398 cellular modified amino acid biosynthetic process IEP HCCA
BP GO:0042558 pteridine-containing compound metabolic process IEP HCCA
BP GO:0042559 pteridine-containing compound biosynthetic process IEP HCCA
CC GO:0042597 periplasmic space IEP HCCA
BP GO:0046653 tetrahydrofolate metabolic process IEP HCCA
BP GO:0046654 tetrahydrofolate biosynthetic process IEP HCCA
MF GO:0070403 NAD+ binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 361 407
IPR002885 Pentatricopeptide_repeat 163 186
No external refs found!