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  5. Azfi_s1017.g095259

Azfi_s1017.g095259


Description : pre-60S ribosomal subunit assembly factor *(NOP4) & original description: CDS=89-3121


Gene families : OG0005318 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005318_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s1017.g095259

Target Alias Description ECC score Gene Family Method Actions
Als_g33867 No alias pre-60S ribosomal subunit assembly factor *(NOP4) &... 0.03 OrthoFinder output from all 47 species
Ceric.10G020200.1 Ceric.10G020200 pre-60S ribosomal subunit assembly factor *(NOP4) &... 0.04 OrthoFinder output from all 47 species
Cre02.g104650 No alias No description available 0.02 OrthoFinder output from all 47 species
Dcu_g16260 No alias pre-60S ribosomal subunit assembly factor *(NOP4) &... 0.03 OrthoFinder output from all 47 species
Ehy_g03991 No alias pre-60S ribosomal subunit assembly factor *(NOP4) &... 0.02 OrthoFinder output from all 47 species
GSVIVT01024222001 No alias No description available 0.05 OrthoFinder output from all 47 species
LOC_Os03g60930.1 LOC_Os03g60930 pre-60S ribosomal subunit assembly factor (NOP4) 0.03 OrthoFinder output from all 47 species
Mp7g13580.1 No alias pre-60S ribosomal subunit assembly factor (NOP4) 0.02 OrthoFinder output from all 47 species
Nbi_g43889 No alias pre-60S ribosomal subunit assembly factor *(NOP4) &... 0.03 OrthoFinder output from all 47 species
Ore_g36856 No alias pre-60S ribosomal subunit assembly factor *(NOP4) &... 0.03 OrthoFinder output from all 47 species
Ppi_g02228 No alias pre-60S ribosomal subunit assembly factor *(NOP4) &... 0.03 OrthoFinder output from all 47 species
Solyc01g109990.4.1 Solyc01g109990 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0017038 protein import IEP HCCA
MF GO:0043167 ion binding IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 329 397
IPR000504 RRM_dom 23 100
IPR000504 RRM_dom 730 800
IPR000504 RRM_dom 576 637
No external refs found!