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  5. Azfi_s0993.g094765

Azfi_s0993.g094765 (RNA_POL_II_LSRNA_POL_I...)


Aliases : RNA_POL_II_LSRNA_POL_II_LS, NRPB1, RPB1, RNA_POL_II_LS

Description : component *(NRPB1) of RNA polymerase II complex & original description: CDS=500-6010


Gene families : OG0003577 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003577_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0993.g094765
Cluster HCCA: Cluster_32

Target Alias Description ECC score Gene Family Method Actions
Aev_g06184 RNA_POL_II_LSRNA_... component *(NRPB1) of RNA polymerase II complex &... 0.02 OrthoFinder output from all 47 species
Aop_g00820 RNA_POL_II_LSRNA_... component *(NRPB1) of RNA polymerase II complex &... 0.04 OrthoFinder output from all 47 species
Aspi01Gene43660.t1 RNA_POL_II_LSRNA_... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000241.15 RNA_POL_II_LSRNA_... RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.03 OrthoFinder output from all 47 species
Dac_g01067 RNA_POL_II_LSRNA_... component *(NRPB1) of RNA polymerase II complex &... 0.03 OrthoFinder output from all 47 species
Dcu_g02060 RNA_POL_II_LSRNA_... component *(NRPB1) of RNA polymerase II complex &... 0.05 OrthoFinder output from all 47 species
Ehy_g31167 RNA_POL_II_LSRNA_... component *(NRPB1) of RNA polymerase II complex &... 0.05 OrthoFinder output from all 47 species
Ore_g27265 RNA_POL_II_LSRNA_... component *(NRPB1) of RNA polymerase II complex &... 0.03 OrthoFinder output from all 47 species
Pir_g10467 RNA_POL_II_LSRNA_... component *(NRPB1) of RNA polymerase II complex &... 0.02 OrthoFinder output from all 47 species
Pnu_g11469 RNA_POL_II_LSRNA_... component *(NRPB1) of RNA polymerase II complex &... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0057.g014794 RNA_POL_II_LSRNA_... component *(NRPB1) of RNA polymerase II complex &... 0.05 OrthoFinder output from all 47 species
Sam_g30215 No alias component *(NRPB1) of RNA polymerase II complex &... 0.03 OrthoFinder output from all 47 species
Smo110201 RNA_POL_II_LSRNA_... RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.02 OrthoFinder output from all 47 species
Tin_g05249 RNA_POL_II_LSRNA_... component *(NRPB1) of RNA polymerase II complex &... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 DNA-templated transcription IEA Interproscan
BP GO:0006366 transcription by RNA polymerase II IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005507 copper ion binding IEP HCCA
InterPro domains Description Start Stop
IPR007066 RNA_pol_Rpb1_3 526 689
IPR007080 RNA_pol_Rpb1_1 14 352
IPR000722 RNA_pol_asu 354 522
IPR007083 RNA_pol_Rpb1_4 720 820
IPR007073 RNA_pol_Rpb1_7 1162 1295
IPR000684 RNA_pol_II_repeat_euk 1600 1613
IPR000684 RNA_pol_II_repeat_euk 1551 1564
IPR000684 RNA_pol_II_repeat_euk 1621 1634
IPR000684 RNA_pol_II_repeat_euk 1789 1802
IPR000684 RNA_pol_II_repeat_euk 1593 1606
IPR000684 RNA_pol_II_repeat_euk 1726 1739
IPR000684 RNA_pol_II_repeat_euk 1712 1725
IPR000684 RNA_pol_II_repeat_euk 1698 1711
IPR000684 RNA_pol_II_repeat_euk 1670 1683
IPR000684 RNA_pol_II_repeat_euk 1579 1592
IPR000684 RNA_pol_II_repeat_euk 1565 1578
IPR000684 RNA_pol_II_repeat_euk 1776 1788
IPR000684 RNA_pol_II_repeat_euk 1614 1627
IPR000684 RNA_pol_II_repeat_euk 1635 1648
IPR000684 RNA_pol_II_repeat_euk 1656 1669
IPR000684 RNA_pol_II_repeat_euk 1628 1641
IPR000684 RNA_pol_II_repeat_euk 1607 1620
IPR000684 RNA_pol_II_repeat_euk 1642 1655
IPR000684 RNA_pol_II_repeat_euk 1684 1697
IPR007075 RNA_pol_Rpb1_6 893 1077
IPR007081 RNA_pol_Rpb1_5 827 1416
No external refs found!