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  5. Azfi_s0627.g079994

Azfi_s0627.g079994


Description : component *(eL19) of large ribosomal-subunit (LSU) proteome & original description: CDS=30-659


Gene families : OG0001435 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001435_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0627.g079994
Cluster HCCA: Cluster_41

Target Alias Description ECC score Gene Family Method Actions
AT1G02780 emb2386 Ribosomal protein L19e family protein 0.05 OrthoFinder output from all 47 species
Aev_g08119 No alias component *(eL19) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Aop_g03394 No alias component *(eL19) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021181.1 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder output from all 47 species
Cre02.g075700 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder output from all 47 species
GSVIVT01035096001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder output from all 47 species
Gb_23171 emb2386 component RPL19 of LSU proteome component 0.04 OrthoFinder output from all 47 species
Gb_23172 No alias component RPL19 of LSU proteome component 0.03 OrthoFinder output from all 47 species
LOC_Os03g21940.1 emb2386, LOC_Os03g21940 component RPL19 of LSU proteome component 0.04 OrthoFinder output from all 47 species
LOC_Os03g38260.1 LOC_Os03g38260 component RPL19 of LSU proteome component 0.04 OrthoFinder output from all 47 species
MA_1839g0010 emb2386 component RPL19 of LSU proteome component 0.04 OrthoFinder output from all 47 species
MA_22977g0010 emb2386 component RPL19 of LSU proteome component 0.04 OrthoFinder output from all 47 species
Mp7g09050.1 No alias component RPL19 of LSU proteome component 0.04 OrthoFinder output from all 47 species
Pnu_g07883 No alias component *(eL19) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Pp3c15_5130V3.1 Pp3c15_5130 Ribosomal protein L19e family protein 0.01 OrthoFinder output from all 47 species
Pp3c16_410V3.1 Pp3c16_410 Ribosomal protein L19e family protein 0.02 OrthoFinder output from all 47 species
Pp3c21_11230V3.1 Pp3c21_11230 Ribosomal protein L19e family protein 0.02 OrthoFinder output from all 47 species
Sam_g25834 No alias component *(eL19) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Sam_g38378 No alias component *(eL19) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Smo179747 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.04 OrthoFinder output from all 47 species
Solyc06g009210.4.1 emb2386, Solyc06g009210 component RPL19 of LSU proteome component 0.04 OrthoFinder output from all 47 species
Solyc09g075430.3.1 Solyc09g075430 component RPL19 of LSU proteome component 0.05 OrthoFinder output from all 47 species
Spa_g11536 No alias component *(eL19) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Spa_g11537 No alias component *(eL19) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Tin_g03158 No alias component *(eL19) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Zm00001e013683_P001 emb2386, Zm00001e013683 component RPL19 of LSU proteome component 0.02 OrthoFinder output from all 47 species
Zm00001e020524_P001 emb2386, Zm00001e020524 component RPL19 of LSU proteome component 0.03 OrthoFinder output from all 47 species
Zm00001e025202_P001 Zm00001e025202 component RPL19 of LSU proteome component 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP HCCA
CC GO:0000178 exosome (RNase complex) IEP HCCA
BP GO:0001510 RNA methylation IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004751 ribose-5-phosphate isomerase activity IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008252 nucleotidase activity IEP HCCA
MF GO:0008253 5'-nucleotidase activity IEP HCCA
MF GO:0008649 rRNA methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009052 pentose-phosphate shunt, non-oxidative branch IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016435 rRNA (guanine) methyltransferase activity IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016860 intramolecular oxidoreductase activity IEP HCCA
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0031167 rRNA methylation IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0036265 RNA (guanine-N7)-methylation IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0070475 rRNA base methylation IEP HCCA
BP GO:0070476 rRNA (guanine-N7)-methylation IEP HCCA
MF GO:0140102 catalytic activity, acting on a rRNA IEP HCCA
CC GO:1905354 exoribonuclease complex IEP HCCA
InterPro domains Description Start Stop
IPR000196 Ribosomal_L19/L19e 4 145
No external refs found!