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  5. Azfi_s0619.g079557

Azfi_s0619.g079557 (EMB2776, LIS)


Aliases : EMB2776, LIS

Description : component *(PRPF4) of spliceosomal U4/U6 snRNP & original description: CDS=178-1842


Gene families : OG0003984 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003984_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0619.g079557

Target Alias Description ECC score Gene Family Method Actions
Cba_g10893 EMB2776, LIS component *(PRPF4) of spliceosomal U4/U6 snRNP &... 0.03 OrthoFinder output from all 47 species
Ceric.09G088700.1 EMB2776, LIS,... component *(PRPF4) of spliceosomal U4/U6 snRNP &... 0.04 OrthoFinder output from all 47 species
Solyc04g016510.3.1 EMB2776, LIS,... protein factor PRPF4 of U4/U6 small nuclear... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003883 CTP synthase activity IEP HCCA
MF GO:0003909 DNA ligase activity IEP HCCA
MF GO:0003910 DNA ligase (ATP) activity IEP HCCA
BP GO:0006220 pyrimidine nucleotide metabolic process IEP HCCA
BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP HCCA
BP GO:0072527 pyrimidine-containing compound metabolic process IEP HCCA
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR014906 PRP4-like 133 161
IPR001680 WD40_repeat 274 299
IPR001680 WD40_repeat 514 550
IPR001680 WD40_repeat 345 382
IPR001680 WD40_repeat 471 509
IPR001680 WD40_repeat 307 341
IPR001680 WD40_repeat 393 424
IPR001680 WD40_repeat 432 466
No external refs found!